Variant report

Variant	rs1206371
Chromosome Location	chr7:121722234-121722235
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1206361	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1206362	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1206372	1.00[CEU][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1206375	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1206378	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12706384	0.82[CEU][hapmap];0.98[EUR][1000 genomes]
rs13223149	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs13225749	0.81[GIH][hapmap]
rs13232539	0.98[EUR][1000 genomes]
rs1405236	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1405237	0.82[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1725067	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2215358	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs279665	0.82[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs279670	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs279673	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs279676	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs279679	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs279680	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs279689	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs279700	1.00[CEU][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs279701	0.82[ASW][hapmap];0.82[CEU][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs279707	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608334	chr7:121670522-121725961	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv427803	chr7:121701581-121876302	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1206371	GNG11	trans	lymphoblastoid	seeQTL

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121684400-121734400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:121685000-121772000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:121685400-121725200	Weak transcription	NHEK	skin
4	chr7:121694400-121726000	Weak transcription	Fetal Brain Male	brain
5	chr7:121703400-121755800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:121704600-121725200	Weak transcription	HSMMtube	muscle
7	chr7:121705800-121724400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:121713600-121732000	Strong transcription	Liver	Liver
9	chr7:121713800-121731800	Strong transcription	Stomach Smooth Muscle	stomach
10	chr7:121714000-121724000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr7:121714200-121733000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:121714600-121723200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:121714800-121733200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:121715200-121730200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr7:121715200-121733200	Weak transcription	NHLF	lung
16	chr7:121715200-121740200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr7:121715400-121752000	Weak transcription	NH-A	brain
18	chr7:121715600-121723000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:121715800-121727400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr7:121715800-121735200	Weak transcription	Spleen	Spleen
21	chr7:121716000-121722800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr7:121716000-121723600	Weak transcription	Gastric	stomach
23	chr7:121716000-121725200	Weak transcription	Esophagus	oesophagus
24	chr7:121716000-121728400	Weak transcription	HepG2	liver
25	chr7:121716000-121731800	Strong transcription	Left Ventricle	heart
26	chr7:121716000-121738400	Weak transcription	Brain Angular Gyrus	brain
27	chr7:121716000-121772000	Weak transcription	Osteobl	bone
28	chr7:121716000-121775600	Weak transcription	Colon Smooth Muscle	Colon
29	chr7:121716200-121725000	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr7:121716200-121733000	Weak transcription	Duodenum Mucosa	Duodenum
31	chr7:121716200-121741000	Weak transcription	HSMM	muscle
32	chr7:121716200-121758200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr7:121716400-121726400	Strong transcription	Adipose Nuclei	Adipose
34	chr7:121716600-121722600	Strong transcription	Fetal Muscle Leg	muscle
35	chr7:121716800-121722600	Strong transcription	Skeletal Muscle Male	skeletal muscle
36	chr7:121717000-121722400	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr7:121717200-121723000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr7:121717400-121722600	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr7:121717600-121743200	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr7:121717800-121723000	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr7:121717800-121744400	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr7:121718000-121722400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr7:121718000-121724200	Strong transcription	H9 Cell Line	embryonic stem cell
44	chr7:121718000-121724400	Weak transcription	Lung	lung
45	chr7:121718000-121740200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr7:121718000-121746800	Weak transcription	Brain Anterior Caudate	brain
47	chr7:121718000-121754200	Weak transcription	Placenta	Placenta
48	chr7:121718000-121754600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr7:121718000-121754800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr7:121718000-121756200	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links