Variant report

Variant	rs2215358
Chromosome Location	chr7:121700088-121700089
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1206361	0.82[CEU][hapmap];0.93[EUR][1000 genomes]
rs1206362	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1206371	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1206372	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1206375	0.93[EUR][1000 genomes]
rs1206378	0.95[EUR][1000 genomes]
rs12706384	0.82[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13223149	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13232539	0.93[EUR][1000 genomes]
rs1405236	0.93[EUR][1000 genomes]
rs1405237	0.82[CEU][hapmap];0.93[EUR][1000 genomes]
rs1725067	0.82[CEU][hapmap];0.93[EUR][1000 genomes]
rs279665	0.82[CEU][hapmap];0.93[EUR][1000 genomes]
rs279670	0.93[EUR][1000 genomes]
rs279673	0.82[CEU][hapmap];0.93[EUR][1000 genomes]
rs279676	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs279679	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs279680	0.93[EUR][1000 genomes]
rs279689	0.86[EUR][1000 genomes]
rs279700	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs279701	0.82[CEU][hapmap];0.93[EUR][1000 genomes]
rs279707	0.93[EUR][1000 genomes]
rs6949360	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608334	chr7:121670522-121725961	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121634400-121706000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:121651200-121717600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:121663800-121705600	Strong transcription	Cortex derived primary cultured neurospheres	brain
4	chr7:121678400-121701800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:121682400-121716600	Weak transcription	Brain Anterior Caudate	brain
6	chr7:121684400-121734400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:121685000-121772000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:121685200-121716800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr7:121685400-121725200	Weak transcription	NHEK	skin
10	chr7:121692200-121716800	Weak transcription	Brain Hippocampus Middle	brain
11	chr7:121692400-121717200	Weak transcription	Brain Substantia Nigra	brain
12	chr7:121693400-121700200	Weak transcription	Brain Germinal Matrix	brain
13	chr7:121694400-121726000	Weak transcription	Fetal Brain Male	brain
14	chr7:121696000-121703400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr7:121696400-121700200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:121698000-121701400	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr7:121698400-121700400	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr7:121698400-121701400	Strong transcription	Fetal Brain Female	brain
19	chr7:121698600-121701400	Strong transcription	H1 Cell Line	embryonic stem cell
20	chr7:121698800-121701000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
21	chr7:121698800-121704400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr7:121699000-121700200	Genic enhancers	HUES64 Cell Line	embryonic stem cell
23	chr7:121699000-121700400	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr7:121699000-121701200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr7:121699200-121700200	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr7:121699200-121701400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr7:121699400-121701400	Strong transcription	H9 Cell Line	embryonic stem cell
28	chr7:121699400-121721000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr7:121699600-121700800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr7:121699800-121701400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:121700000-121700400	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr7:121700000-121703000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr7:121700000-121704400	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr7:121700000-121705600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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