Variant report

Variant	rs10458721
Chromosome Location	chr10:49905547-49905548
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10857619	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10857620	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10857621	0.84[ASN][1000 genomes]
rs10857622	0.80[ASN][1000 genomes]
rs11101430	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11101431	0.84[ASN][1000 genomes]
rs12768309	0.89[CEU][hapmap];0.82[AMR][1000 genomes]
rs12783753	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2889687	0.80[ASN][1000 genomes]
rs7897333	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7911189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7922132	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7924148	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1049259	chr10:49901984-49924310	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49895200-49906200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr10:49897000-49918200	Genic enhancers	Primary B cells from peripheral blood	blood
3	chr10:49900200-49908600	Weak transcription	Colonic Mucosa	Colon
4	chr10:49900400-49906600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr10:49900800-49906800	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr10:49900800-49908800	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr10:49901600-49907200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:49902200-49907000	Weak transcription	Right Atrium	heart
9	chr10:49902400-49906000	Weak transcription	Fetal Thymus	thymus
10	chr10:49903400-49907400	Weak transcription	Fetal Muscle Leg	muscle
11	chr10:49903600-49905800	Weak transcription	Right Ventricle	heart
12	chr10:49903800-49907400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:49903800-49911400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr10:49904200-49906800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:49904200-49907000	Strong transcription	Primary B cells from cord blood	blood
16	chr10:49904200-49909600	Genic enhancers	GM12878-XiMat	blood
17	chr10:49904400-49906800	Strong transcription	Primary hematopoietic stem cells	blood
18	chr10:49904800-49905800	Weak transcription	Spleen	Spleen
19	chr10:49905400-49905800	Genic enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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