Variant report

Variant	rs7897333
Chromosome Location	chr10:49910210-49910211
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49905321..49907163-chr10:49908758..49910587,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10458721	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10776639	0.88[ASN][1000 genomes]
rs10857619	0.96[CEU][hapmap];0.84[CHB][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10857620	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11101430	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12768309	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12783753	0.82[AMR][1000 genomes]
rs7911189	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7922132	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.97[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7924148	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1049259	chr10:49901984-49924310	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7897333	MARCH8	cis	cerebellum	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49897000-49918200	Genic enhancers	Primary B cells from peripheral blood	blood
2	chr10:49903800-49911400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr10:49907400-49917800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr10:49907600-49911800	Weak transcription	Left Ventricle	heart
5	chr10:49907600-49912200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:49907800-49910800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:49907800-49912000	Weak transcription	Right Ventricle	heart
8	chr10:49908200-49911000	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr10:49908200-49922800	Weak transcription	Spleen	Spleen
10	chr10:49909200-49910800	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr10:49909400-49910800	Enhancers	Fetal Thymus	thymus
12	chr10:49909400-49911000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:49909400-49911400	Enhancers	Primary B cells from cord blood	blood
14	chr10:49909600-49911000	Enhancers	Primary hematopoietic stem cells	blood
15	chr10:49909600-49912000	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr10:49909600-49912200	Enhancers	Fetal Stomach	stomach
17	chr10:49909800-49910400	Enhancers	GM12878-XiMat	blood
18	chr10:49909800-49912400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr10:49910000-49910600	Enhancers	Fetal Heart	heart
20	chr10:49910000-49914000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr10:49910200-49910400	Enhancers	Duodenum Mucosa	Duodenum
22	chr10:49910200-49910600	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr10:49910200-49911000	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr10:49910200-49913200	Enhancers	Fetal Lung	lung

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