Variant report

Variant	rs10458858
Chromosome Location	chr11:23970386-23970387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10500972	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11027642	0.81[AMR][1000 genomes]
rs11027643	0.81[AMR][1000 genomes]
rs11027644	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11027648	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs16911971	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2139516	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4077181	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4381370	0.81[AMR][1000 genomes]
rs4604882	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7925961	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7945235	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7946438	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7946677	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897062	chr11:23687928-24031627	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916840	chr11:23710275-24064119	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23967200-23973000	Weak transcription	Fetal Lung	lung
2	chr11:23969000-23970800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:23969000-23970800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:23969000-23970800	Enhancers	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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