Variant report

Variant	rs4077181
Chromosome Location	chr11:23983409-23983410
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10458858	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10500972	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10834257	0.83[ASN][1000 genomes]
rs11027642	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11027643	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11027644	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11027648	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16911971	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2139516	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4381370	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4604882	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7925961	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7945235	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7946438	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7946677	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897062	chr11:23687928-24031627	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916840	chr11:23710275-24064119	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv897070	chr11:23982573-24074207	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv897071	chr11:23982573-24157765	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23981800-23983600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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