Variant report

Variant	rs10459608
Chromosome Location	chr15:40220156-40220157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1436278	0.83[ASN][1000 genomes]
rs1689605	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16970030	0.84[ASN][1000 genomes]
rs16970033	0.83[ASN][1000 genomes]
rs16970098	0.81[ASN][1000 genomes]
rs2196470	0.89[ASN][1000 genomes]
rs35390951	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4566130	0.82[ASN][1000 genomes]
rs472027	0.81[ASN][1000 genomes]
rs503671	0.83[ASN][1000 genomes]
rs66690776	0.91[AMR][1000 genomes]
rs7170569	0.83[ASN][1000 genomes]
rs72729459	0.89[ASN][1000 genomes]
rs72729462	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv832983	chr15:40098766-40248839	Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40213600-40225000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:40213600-40225400	Weak transcription	Pancreas	Pancrea
3	chr15:40213800-40225800	Weak transcription	Right Atrium	heart
4	chr15:40215200-40226000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:40215600-40225800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:40218200-40224800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:40218200-40225000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr15:40218400-40224200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr15:40218400-40224800	Weak transcription	Hela-S3	cervix
10	chr15:40219000-40224800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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