Variant report

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:40211846..40214390-chr15:40224576..40226655,2	K562	blood:
2	chr15:40222962..40225062-chr15:40343455..40345112,2	K562	blood:
3	chr15:40214834..40219458-chr15:40222098..40228403,10	K562	blood:
4	chr15:40209081..40211622-chr15:40223398..40225588,2	K562	blood:
5	chr15:40093040..40094841-chr15:40224572..40226141,2	K562	blood:
6	chr15:40214696..40216721-chr15:40223722..40226672,2	MCF-7	breast:
7	chr15:40211366..40214080-chr15:40223428..40228644,6	MCF-7	breast:
8	chr15:40224751..40226290-chr15:40266670..40268838,2	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10459608	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1436278	0.80[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs1689605	0.94[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16970030	0.93[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs16970033	0.80[CHB][hapmap];0.94[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs16970098	0.86[CHB][hapmap];0.80[JPT][hapmap];0.82[ASN][1000 genomes]
rs16970132	0.88[JPT][hapmap]
rs16970168	0.82[JPT][hapmap]
rs2196470	0.94[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2279580	0.82[JPT][hapmap]
rs2291623	0.82[JPT][hapmap]
rs2307105	0.88[CHD][hapmap]
rs2307107	0.82[JPT][hapmap]
rs2898974	0.82[JPT][hapmap]
rs3765127	0.83[AFR][1000 genomes]
rs4566130	0.80[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs472027	0.82[ASN][1000 genomes]
rs503671	0.80[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs510949	0.88[CHD][hapmap]
rs514152	0.88[CHD][hapmap]
rs66690776	0.92[AMR][1000 genomes]
rs7165105	0.88[JPT][hapmap]
rs7170569	0.86[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs7174767	0.81[CHD][hapmap]
rs72729459	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72729462	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv832983	chr15:40098766-40248839	Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40213600-40225000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:40213600-40225400	Weak transcription	Pancreas	Pancrea
3	chr15:40213800-40225800	Weak transcription	Right Atrium	heart
4	chr15:40215200-40226000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:40215600-40225800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:40218200-40225000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr15:40224200-40225600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr15:40224200-40225600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr15:40224200-40226000	Weak transcription	Fetal Heart	heart
10	chr15:40224800-40225000	Enhancers	Hela-S3	cervix
11	chr15:40224800-40225200	Enhancers	K562	blood
12	chr15:40224800-40225400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr15:40224800-40225400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:40224800-40225800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:40224800-40225800	Enhancers	NHLF	lung
16	chr15:40224800-40226800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:40224800-40227800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin

Quick Search: