Variant report

Variant	rs7165105
Chromosome Location	chr15:40273788-40273789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs12441486	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1436276	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1436278	0.87[JPT][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1689605	0.85[GIH][hapmap];0.88[JPT][hapmap]
rs16970030	0.88[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16970033	1.00[GIH][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16970098	0.80[JPT][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16970132	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16970164	1.00[CEU][hapmap]
rs16970168	0.82[JPT][hapmap]
rs2196470	0.88[JPT][hapmap];0.83[AMR][1000 genomes]
rs2279580	0.82[JPT][hapmap]
rs2291623	0.82[JPT][hapmap]
rs2307102	1.00[CEU][hapmap]
rs2307105	1.00[GIH][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2307106	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2307107	0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2640645	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28369403	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28619481	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2898974	0.82[JPT][hapmap]
rs35390951	0.88[JPT][hapmap]
rs3765127	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4566130	0.85[GIH][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs472027	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs479500	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs503671	0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs509200	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs510949	1.00[GIH][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs514152	1.00[GIH][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs518802	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs536503	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs548091	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7170569	0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7174767	1.00[GIH][hapmap];0.84[JPT][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72729459	0.83[AMR][1000 genomes]
rs72729462	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72729469	0.81[AMR][1000 genomes]
rs72729490	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72729494	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8029465	0.93[JPT][hapmap];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs8036381	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8036388	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9888665	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40227400-40283400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:40228200-40323800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr15:40236600-40303000	Weak transcription	Small Intestine	intestine
4	chr15:40238000-40277800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr15:40249000-40304800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr15:40250000-40294800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr15:40250200-40299600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr15:40253000-40273800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:40260800-40303400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr15:40261000-40277800	Weak transcription	A549	lung
11	chr15:40262600-40293800	Weak transcription	Stomach Mucosa	stomach
12	chr15:40266400-40281800	Weak transcription	K562	blood
13	chr15:40266600-40278000	Weak transcription	GM12878-XiMat	blood
14	chr15:40267000-40278000	Weak transcription	Hela-S3	cervix
15	chr15:40267800-40278400	Weak transcription	Primary B cells from cord blood	blood
16	chr15:40269000-40274600	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr15:40269000-40277800	Weak transcription	Aorta	Aorta
18	chr15:40269000-40277800	Weak transcription	Gastric	stomach
19	chr15:40269000-40277800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr15:40269000-40278000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr15:40269000-40284800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr15:40269000-40293200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:40269000-40293200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr15:40269200-40274200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:40269200-40274600	Strong transcription	NHEK	skin
26	chr15:40269200-40275800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr15:40269200-40277800	Weak transcription	Ovary	ovary
28	chr15:40269200-40277800	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr15:40269200-40277800	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr15:40269200-40277800	Weak transcription	Thymus	Thymus
31	chr15:40269200-40278000	Weak transcription	Left Ventricle	heart
32	chr15:40269200-40278000	Weak transcription	Pancreas	Pancrea
33	chr15:40269200-40278000	Weak transcription	Right Ventricle	heart
34	chr15:40269200-40278200	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr15:40269200-40282000	Weak transcription	Esophagus	oesophagus
36	chr15:40269200-40283000	Weak transcription	Psoas Muscle	Psoas
37	chr15:40269400-40277800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr15:40269400-40277800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr15:40269400-40277800	Weak transcription	Spleen	Spleen
40	chr15:40269400-40278000	Weak transcription	Liver	Liver
41	chr15:40269400-40278000	Weak transcription	Brain Substantia Nigra	brain
42	chr15:40269400-40278000	Weak transcription	Stomach Smooth Muscle	stomach
43	chr15:40269400-40281600	Weak transcription	Colonic Mucosa	Colon
44	chr15:40269400-40283000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr15:40269600-40277800	Weak transcription	Colon Smooth Muscle	Colon
46	chr15:40269600-40277800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr15:40269600-40277800	Weak transcription	Lung	lung
48	chr15:40269600-40277800	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr15:40269600-40278000	Weak transcription	Brain Germinal Matrix	brain
50	chr15:40269600-40278000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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