Variant report

Variant	rs72729469
Chromosome Location	chr15:40251198-40251199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40249478..40251970-chr15:40252584..40255230,2	K562	blood:
2	chr15:40249084..40251970-chr15:40253423..40255230,2	K562	blood:
3	chr15:40244109..40246944-chr15:40248464..40252710,3	MCF-7	breast:
4	chr15:40251187..40253303-chr15:40260460..40262818,2	K562	blood:

Variant related genes	Relation type
ENSG00000128829	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12441486	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1436276	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1436278	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16970030	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16970033	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16970098	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16970132	0.85[AMR][1000 genomes]
rs2196470	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2307105	0.87[EUR][1000 genomes]
rs2307106	0.87[EUR][1000 genomes]
rs2307107	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2640645	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28369403	0.85[AMR][1000 genomes]
rs28619481	0.85[AMR][1000 genomes]
rs3765127	0.86[ASN][1000 genomes]
rs4566130	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs472027	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs479500	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs503671	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs509200	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs510949	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs514152	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs518802	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs536503	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs548091	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7165105	0.81[AMR][1000 genomes]
rs7170569	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7174767	0.87[EUR][1000 genomes]
rs72729459	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs72729462	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72729490	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72729494	0.85[AMR][1000 genomes]
rs8029465	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8036381	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8036388	0.87[EUR][1000 genomes]
rs9888665	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40227200-40268400	Weak transcription	Esophagus	oesophagus
2	chr15:40227400-40283400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:40227800-40268400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:40228200-40323800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr15:40230000-40263000	Strong transcription	Fetal Muscle Trunk	muscle
6	chr15:40230200-40255600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr15:40230400-40261600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:40230600-40252400	Weak transcription	Right Atrium	heart
9	chr15:40231000-40268400	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr15:40231800-40252600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr15:40232000-40261400	Strong transcription	Skeletal Muscle Female	skeletal muscle
12	chr15:40232000-40262600	Strong transcription	Liver	Liver
13	chr15:40232200-40252400	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr15:40232400-40252400	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr15:40232600-40251800	Strong transcription	Adipose Nuclei	Adipose
16	chr15:40235000-40263000	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr15:40236000-40255400	Strong transcription	Fetal Lung	lung
18	chr15:40236000-40260000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr15:40236600-40303000	Weak transcription	Small Intestine	intestine
20	chr15:40237800-40255600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr15:40238000-40277800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr15:40238600-40268200	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr15:40238600-40272200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr15:40238800-40273200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:40239200-40259600	Weak transcription	Fetal Brain Male	brain
26	chr15:40239400-40261200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr15:40239400-40262000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr15:40239600-40251400	Strong transcription	Osteobl	bone
29	chr15:40239600-40261400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr15:40239800-40262200	Strong transcription	Muscle Satellite Cultured Cells	--
31	chr15:40240000-40251200	Strong transcription	NHDF-Ad	bronchial
32	chr15:40240200-40261000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr15:40240400-40252000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr15:40240800-40268000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr15:40241000-40252400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr15:40241000-40252400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr15:40241000-40268600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr15:40241200-40272600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr15:40241400-40256000	Strong transcription	Primary T cells from cord blood	blood
40	chr15:40241400-40260800	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr15:40241400-40262800	Strong transcription	Fetal Intestine Large	intestine
42	chr15:40241800-40259800	Weak transcription	Stomach Mucosa	stomach
43	chr15:40242400-40252800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr15:40242600-40255600	Strong transcription	Fetal Muscle Leg	muscle
45	chr15:40243200-40254800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr15:40243200-40262600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr15:40243400-40252400	Strong transcription	HUVEC	blood vessel
48	chr15:40243600-40251600	Strong transcription	Fetal Thymus	thymus
49	chr15:40243800-40252800	Strong transcription	H1 Cell Line	embryonic stem cell
50	chr15:40245000-40255000	Strong transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links