The 2.0 version of rSNPBase

Variant report

Variant rs10459927
Chromosome Location chr17:45981536-45981537
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:45974200-45982800 Weak transcription Spleen Spleen
2 chr17:45974600-45981600 Weak transcription Pancreas Pancrea
3 chr17:45974600-45981800 Weak transcription Ovary ovary
4 chr17:45974600-45992000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
5 chr17:45975000-45982000 Weak transcription Esophagus oesophagus
6 chr17:45975000-45982200 Weak transcription Colonic Mucosa Colon
7 chr17:45975000-45982800 Weak transcription Gastric stomach
8 chr17:45975000-45993400 Weak transcription Placenta Amnion Placenta Amnion
9 chr17:45975200-45982200 Weak transcription Stomach Mucosa stomach
10 chr17:45975200-45999400 Weak transcription Fetal Kidney kidney
11 chr17:45975200-46000400 Weak transcription Small Intestine intestine
12 chr17:45975400-45981600 Weak transcription A549 lung
13 chr17:45975400-45981800 Weak transcription Brain Inferior Temporal Lobe brain
14 chr17:45975400-45982400 Weak transcription NHEK skin
15 chr17:45975400-45983000 Weak transcription HUVEC blood vessel
16 chr17:45975600-45981600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
17 chr17:45975600-45992800 Enhancers Breast Myoepithelial Primary Cells Breast
18 chr17:45975800-45981800 Strong transcription Fetal Stomach stomach
19 chr17:45975800-46000600 Weak transcription Hela-S3 cervix
20 chr17:45976000-45981600 Weak transcription Duodenum Mucosa Duodenum
21 chr17:45976200-45981600 Weak transcription Duodenum Smooth Muscle Duodenum
22 chr17:45976400-45981600 Weak transcription Rectal Smooth Muscle rectum
23 chr17:45976400-45981600 Weak transcription HMEC breast
24 chr17:45976400-45983000 Weak transcription Aorta Aorta
25 chr17:45976400-45993200 Weak transcription Primary T helper naive cells from peripheral blood blood
26 chr17:45976400-45995400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
27 chr17:45976800-45983000 Strong transcription Primary monocytes fromperipheralblood blood
28 chr17:45976800-45987000 Strong transcription Fetal Intestine Small intestine
29 chr17:45977000-45984000 Strong transcription Monocytes-CD14+_RO01746 blood
30 chr17:45977200-45981600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
31 chr17:45977200-45984800 Weak transcription Primary hematopoietic stem cells blood
32 chr17:45977400-45981600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr17:45977400-45981600 Weak transcription Brain Anterior Caudate brain
34 chr17:45977400-45982200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr17:45977600-45981600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
36 chr17:45977600-45981600 Weak transcription Liver Liver
37 chr17:45977600-45981800 Weak transcription HSMMtube muscle
38 chr17:45977600-45982200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
39 chr17:45977600-45982600 Enhancers Skeletal Muscle Female skeletal muscle
40 chr17:45977600-45982800 Weak transcription Rectal Mucosa Donor 29 rectum
41 chr17:45977600-45992800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
42 chr17:45977600-45995000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
43 chr17:45977800-45982400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
44 chr17:45977800-45992000 Weak transcription Dnd41 blood
45 chr17:45977800-45992600 Weak transcription Fetal Intestine Large intestine
46 chr17:45977800-45992600 Weak transcription Sigmoid Colon Sigmoid Colon
47 chr17:45977800-45992800 Weak transcription GM12878-XiMat blood
48 chr17:45978000-45982200 Weak transcription Primary T cells from cord blood blood
49 chr17:45978000-45982800 Weak transcription Fetal Brain Female brain
50 chr17:45978200-45981800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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Last update: Aug 31, 2015