Variant report

Variant	rs10460698
Chromosome Location	chr21:28224720-28224721
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10470139	0.93[ASN][1000 genomes]
rs11910373	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1444274	0.81[ASN][1000 genomes]
rs1475583	0.83[ASN][1000 genomes]
rs1475584	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2830553	0.99[ASN][1000 genomes]
rs2830557	0.92[ASN][1000 genomes]
rs67979457	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9305292	0.93[ASN][1000 genomes]
rs9305293	0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9976037	0.97[ASN][1000 genomes]
rs9976082	0.95[ASN][1000 genomes]
rs9978507	0.86[ASN][1000 genomes]
rs9981017	0.91[ASN][1000 genomes]
rs9981095	0.91[ASN][1000 genomes]
rs9981200	0.93[ASN][1000 genomes]
rs9981427	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066573	chr21:28096356-28374354	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1057400	chr21:28104936-28359948	Strong transcription Genic enhancers Bivalent/Poised TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv834068	chr21:28179670-28360808	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:28219400-28224800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr21:28219400-28229000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr21:28222000-28225800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr21:28222200-28225600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr21:28222200-28226000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr21:28223000-28225000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr21:28223000-28225400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr21:28223200-28225600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr21:28223400-28225200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr21:28223400-28225400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr21:28223400-28225600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr21:28223600-28225600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr21:28223800-28225200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr21:28224000-28225200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr21:28224000-28225400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr21:28224000-28228000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr21:28224400-28225600	Enhancers	H9 Cell Line	embryonic stem cell
18	chr21:28224600-28225000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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