Variant report

Variant	rs10460850
Chromosome Location	chr3:145967904-145967905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10935609	0.91[ASN][1000 genomes]
rs11926040	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12488776	0.90[ASN][1000 genomes]
rs12629875	0.91[ASN][1000 genomes]
rs13079270	0.92[ASN][1000 genomes]
rs13086396	0.91[ASN][1000 genomes]
rs13086427	0.85[ASN][1000 genomes]
rs1398527	0.86[ASN][1000 genomes]
rs1512894	0.92[ASN][1000 genomes]
rs1606265	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2036979	0.92[ASN][1000 genomes]
rs2175669	0.92[ASN][1000 genomes]
rs2867080	0.90[ASN][1000 genomes]
rs34773907	0.92[ASN][1000 genomes]
rs35187466	0.91[ASN][1000 genomes]
rs35499991	0.91[ASN][1000 genomes]
rs35616919	0.91[ASN][1000 genomes]
rs3804650	0.92[ASN][1000 genomes]
rs3804652	0.92[ASN][1000 genomes]
rs3804653	0.92[ASN][1000 genomes]
rs3828377	0.92[ASN][1000 genomes]
rs3828378	0.92[ASN][1000 genomes]
rs3828379	0.91[ASN][1000 genomes]
rs3920230	0.91[ASN][1000 genomes]
rs61207913	0.92[ASN][1000 genomes]
rs62272407	0.92[ASN][1000 genomes]
rs6808115	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877614	chr3:145903426-146025896	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv877615	chr3:145910430-145988231	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv877616	chr3:145921954-145983688	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3333601	chr3:145940702-146068210	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3416330	chr3:145941029-146068457	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3452197	chr3:145950303-145974111	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	esv3333990	chr3:145950303-145982133	ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	nsv998388	chr3:145960954-146087749	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145953200-145968000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:145964000-145968200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:145965400-145969800	Active TSS	Right Atrium	heart
4	chr3:145965600-145968200	Weak transcription	Lung	lung
5	chr3:145965600-145969200	Active TSS	Aorta	Aorta
6	chr3:145965800-145968200	Weak transcription	Pancreas	Pancrea
7	chr3:145965800-145969600	Active TSS	NHLF	lung
8	chr3:145966200-145969600	Active TSS	Stomach Smooth Muscle	stomach
9	chr3:145966200-145969800	Active TSS	Colon Smooth Muscle	Colon
10	chr3:145966400-145969400	Active TSS	Fetal Stomach	stomach
11	chr3:145966400-145969800	Active TSS	Ovary	ovary
12	chr3:145966400-145969800	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr3:145966600-145969200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:145966600-145969600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:145966800-145969000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:145966800-145969400	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr3:145966800-145969600	Active TSS	Duodenum Smooth Muscle	Duodenum
18	chr3:145967200-145969000	Active TSS	Brain Angular Gyrus	brain
19	chr3:145967200-145969400	Active TSS	HUVEC	blood vessel
20	chr3:145967200-145969800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:145967200-145969800	Active TSS	Osteobl	bone
22	chr3:145967600-145968000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:145967600-145968000	Flanking Active TSS	Liver	Liver
24	chr3:145967600-145968000	Flanking Active TSS	NHDF-Ad	bronchial
25	chr3:145967600-145968400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:145967800-145968000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
27	chr3:145967800-145968000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
28	chr3:145967800-145968000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
29	chr3:145967800-145968000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
30	chr3:145967800-145968000	Active TSS	Primary hematopoietic stem cells	blood
31	chr3:145967800-145968000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
32	chr3:145967800-145968000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr3:145967800-145968000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr3:145967800-145968000	Flanking Active TSS	Fetal Intestine Large	intestine
35	chr3:145967800-145968000	Flanking Active TSS	Fetal Intestine Small	intestine
36	chr3:145967800-145968000	Transcr. at gene 5' and 3'	Fetal Lung	lung
37	chr3:145967800-145968000	Enhancers	Placenta Amnion	Placenta Amnion
38	chr3:145967800-145968000	Flanking Active TSS	Rectal Smooth Muscle	rectum
39	chr3:145967800-145968000	Active TSS	Stomach Mucosa	stomach
40	chr3:145967800-145968000	Enhancers	NH-A	brain
41	chr3:145967800-145968000	Enhancers	NHEK	skin
42	chr3:145967800-145968200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr3:145967800-145968200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:145967800-145968200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr3:145967800-145968200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
46	chr3:145967800-145968200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr3:145967800-145968200	Flanking Active TSS	Adipose Nuclei	Adipose
48	chr3:145967800-145968200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
49	chr3:145967800-145968200	Bivalent/Poised TSS	Fetal Brain Male	brain
50	chr3:145967800-145968200	Active TSS	Fetal Brain Female	brain

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