Variant report

Variant	rs1046156
Chromosome Location	chr15:62145214-62145215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10851704	0.88[CEU][hapmap]
rs10851705	0.91[CEU][hapmap]
rs11071634	0.92[CEU][hapmap];0.81[TSI][hapmap]
rs11071635	0.92[CEU][hapmap]
rs11071641	0.82[CEU][hapmap]
rs11071647	0.80[CEU][hapmap]
rs11629528	0.80[CEU][hapmap]
rs11631013	0.92[CEU][hapmap]
rs11634516	0.92[CEU][hapmap];0.85[TSI][hapmap]
rs12438431	0.92[CEU][hapmap]
rs12708468	0.88[CEU][hapmap]
rs12898209	0.84[CEU][hapmap]
rs12902092	0.92[CEU][hapmap]
rs1364810	0.88[CEU][hapmap]
rs1370177	0.84[CEU][hapmap]
rs17238252	0.81[CEU][hapmap]
rs17271235	0.88[CEU][hapmap]
rs1991205	0.92[CEU][hapmap]
rs2042610	0.88[CEU][hapmap]
rs2113932	0.84[CEU][hapmap]
rs2113933	0.84[CEU][hapmap]
rs2162064	0.81[CEU][hapmap]
rs2241491	0.92[CEU][hapmap]
rs3743294	0.88[CEU][hapmap]
rs3784632	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.87[YRI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3809517	0.91[CEU][hapmap]
rs3886246	0.92[CEU][hapmap]
rs4372632	0.80[CEU][hapmap]
rs4541010	0.88[CEU][hapmap]
rs4620905	0.80[CEU][hapmap]
rs4774425	0.92[CEU][hapmap]
rs4775442	0.92[CEU][hapmap]
rs4775447	0.92[CEU][hapmap];0.81[TSI][hapmap]
rs6494299	0.92[CEU][hapmap]
rs7161883	0.80[CEU][hapmap]
rs7163441	0.88[CEU][hapmap];0.83[TSI][hapmap]
rs7168164	0.84[CEU][hapmap]
rs9788670	0.82[CEU][hapmap];0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904284	chr15:62123600-62243197	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv521334	chr15:62129809-62340126	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv527451	chr15:62129809-62340126	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:62132400-62159000	Weak transcription	HSMM	muscle
2	chr15:62132400-62171200	Weak transcription	HMEC	breast
3	chr15:62132800-62146600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:62135000-62161600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr15:62136800-62150000	Weak transcription	HSMMtube	muscle
6	chr15:62137400-62145400	Weak transcription	Liver	Liver
7	chr15:62138800-62184200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:62139200-62146000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr15:62139200-62146600	Weak transcription	Pancreas	Pancrea
10	chr15:62139200-62182200	Weak transcription	Brain Substantia Nigra	brain
11	chr15:62139400-62154800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr15:62139600-62145400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr15:62139800-62185200	Weak transcription	NHLF	lung
14	chr15:62140000-62184800	Weak transcription	Right Ventricle	heart
15	chr15:62140200-62180000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr15:62140400-62145800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr15:62140800-62146400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr15:62140800-62149000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr15:62141000-62149400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr15:62141200-62149600	Weak transcription	Psoas Muscle	Psoas
21	chr15:62141200-62165400	Weak transcription	Brain Hippocampus Middle	brain
22	chr15:62141400-62146600	Weak transcription	GM12878-XiMat	blood
23	chr15:62141400-62160600	Weak transcription	Placenta	Placenta
24	chr15:62141400-62161400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr15:62141600-62146200	Weak transcription	Stomach Smooth Muscle	stomach
26	chr15:62141600-62146400	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr15:62141600-62149200	Weak transcription	Ovary	ovary
28	chr15:62141600-62161400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr15:62141600-62165000	Weak transcription	Thymus	Thymus
30	chr15:62141800-62145800	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr15:62141800-62146400	Weak transcription	Fetal Muscle Leg	muscle
32	chr15:62141800-62149400	Weak transcription	Aorta	Aorta
33	chr15:62142000-62145600	Weak transcription	Colon Smooth Muscle	Colon
34	chr15:62142000-62147400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr15:62142000-62165000	Weak transcription	Gastric	stomach
36	chr15:62142000-62209400	Weak transcription	Colonic Mucosa	Colon
37	chr15:62142200-62161600	Weak transcription	Fetal Stomach	stomach
38	chr15:62142200-62162800	Weak transcription	Hela-S3	cervix
39	chr15:62142400-62146400	Weak transcription	Brain Anterior Caudate	brain
40	chr15:62142400-62160800	Weak transcription	Fetal Muscle Trunk	muscle
41	chr15:62142400-62163800	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr15:62142400-62253000	Weak transcription	Spleen	Spleen
43	chr15:62142600-62145600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr15:62142600-62145800	Weak transcription	Primary B cells from peripheral blood	blood
45	chr15:62142600-62146400	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr15:62142600-62209200	Weak transcription	K562	blood
47	chr15:62143000-62164000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr15:62143200-62147200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr15:62143200-62151800	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr15:62143200-62152400	Strong transcription	Monocytes-CD14+_RO01746	blood

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