Variant report

Variant	rs10461966
Chromosome Location	chr5:36281258-36281259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16902928	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16902951	0.83[AMR][1000 genomes]
rs2202006	1.00[AMR][1000 genomes]
rs4576170	1.00[AMR][1000 genomes]
rs4869647	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases
2	nsv1015638	chr5:36203646-36312576	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
3	nsv881598	chr5:36248752-36382802	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36262800-36283800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr5:36272600-36281800	Weak transcription	Brain Substantia Nigra	brain
3	chr5:36274800-36282800	Weak transcription	Brain Anterior Caudate	brain
4	chr5:36275200-36281600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr5:36277200-36282600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:36278800-36282000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr5:36280600-36281400	Weak transcription	Aorta	Aorta
8	chr5:36280600-36281600	Weak transcription	Brain Hippocampus Middle	brain
9	chr5:36280600-36281800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr5:36280600-36282600	Weak transcription	Ovary	ovary
11	chr5:36280800-36282000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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