Variant report

Variant	rs2202006
Chromosome Location	chr5:36305222-36305223
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:36299305..36302119-chr5:36303803..36306796,2	MCF-7	breast:
2	chr5:36265246..36266228-chr5:36304794..36306080,5	MCF-7	breast:
3	chr5:36300989..36303714-chr5:36304161..36306308,2	K562	blood:
4	chr5:36303559..36305912-chr5:36335006..36337019,2	K562	blood:
5	chr5:36304671..36307590-chr5:36352019..36354377,2	K562	blood:
6	chr5:36303763..36306524-chr5:36340085..36342661,2	K562	blood:
7	chr5:36191769..36193419-chr5:36303585..36306206,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164188	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10461966	1.00[AMR][1000 genomes]
rs12054958	0.89[MEX][hapmap]
rs16902812	0.86[MEX][hapmap]
rs16902827	0.89[MEX][hapmap]
rs16902871	0.89[MEX][hapmap]
rs16902928	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs16902951	0.83[AMR][1000 genomes]
rs4329037	0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4333341	0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4576170	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4869471	0.89[MEX][hapmap]
rs4869637	0.89[MEX][hapmap]
rs4869647	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015638	chr5:36203646-36312576	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv881598	chr5:36248752-36382802	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36301600-36305800	Weak transcription	Gastric	stomach
2	chr5:36302600-36305400	Weak transcription	Fetal Heart	heart
3	chr5:36302600-36305600	Weak transcription	Brain Germinal Matrix	brain
4	chr5:36302600-36305800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr5:36302600-36305800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr5:36302600-36305800	Weak transcription	Fetal Kidney	kidney
7	chr5:36302800-36305600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:36302800-36305600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr5:36302800-36305600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:36302800-36305600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr5:36302800-36305600	Weak transcription	Fetal Intestine Large	intestine
12	chr5:36302800-36305600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr5:36302800-36305600	Weak transcription	Ovary	ovary
14	chr5:36302800-36305600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr5:36302800-36305600	Weak transcription	NH-A	brain
16	chr5:36302800-36305600	Weak transcription	NHDF-Ad	bronchial
17	chr5:36302800-36305600	Weak transcription	NHLF	lung
18	chr5:36302800-36305800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr5:36302800-36305800	Weak transcription	Small Intestine	intestine
20	chr5:36302800-36305800	Weak transcription	HSMM	muscle
21	chr5:36303000-36305600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr5:36303000-36305800	Weak transcription	Adipose Nuclei	Adipose
23	chr5:36303000-36305800	Weak transcription	Brain Substantia Nigra	brain
24	chr5:36303000-36305800	Weak transcription	Stomach Smooth Muscle	stomach
25	chr5:36303000-36305800	Weak transcription	Hela-S3	cervix
26	chr5:36303000-36305800	Weak transcription	Osteobl	bone
27	chr5:36303200-36305600	Weak transcription	Brain Angular Gyrus	brain
28	chr5:36303200-36305600	Weak transcription	Colon Smooth Muscle	Colon
29	chr5:36303200-36305600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr5:36303200-36305600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr5:36303400-36305600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr5:36303400-36305600	Weak transcription	Fetal Lung	lung
33	chr5:36304200-36305600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr5:36304200-36306000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr5:36304200-36306200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr5:36304400-36308400	Enhancers	Liver	Liver
37	chr5:36304600-36305600	Weak transcription	Aorta	Aorta
38	chr5:36304600-36305600	Weak transcription	Right Atrium	heart
39	chr5:36304800-36305800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr5:36305000-36305400	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr5:36305000-36305400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr5:36305000-36310400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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