Variant report

Variant	rs4333341
Chromosome Location	chr5:36303067-36303068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr5:36301891-36303188	HEK293	kidney:	n/a	chr5:36301908-36301916

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36302233..36304100-chr5:36311360..36313633,2	K562	blood:

Variant related genes	Relation type
RANBP3L	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10473009	0.86[YRI][hapmap];0.97[AFR][1000 genomes]
rs2202006	0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4329037	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4576170	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015638	chr5:36203646-36312576	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv881598	chr5:36248752-36382802	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36301600-36305800	Weak transcription	Gastric	stomach
2	chr5:36302400-36304600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:36302600-36303200	Enhancers	Fetal Stomach	stomach
4	chr5:36302600-36305400	Weak transcription	Fetal Heart	heart
5	chr5:36302600-36305600	Weak transcription	Brain Germinal Matrix	brain
6	chr5:36302600-36305800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr5:36302600-36305800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr5:36302600-36305800	Weak transcription	Fetal Kidney	kidney
9	chr5:36302800-36303200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:36302800-36303200	Enhancers	Brain Angular Gyrus	brain
11	chr5:36302800-36303200	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr5:36302800-36303400	Enhancers	Liver	Liver
13	chr5:36302800-36304000	Weak transcription	Placenta	Placenta
14	chr5:36302800-36304200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:36302800-36304200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr5:36302800-36304400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr5:36302800-36304400	Weak transcription	Right Atrium	heart
18	chr5:36302800-36305000	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr5:36302800-36305600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr5:36302800-36305600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr5:36302800-36305600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr5:36302800-36305600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr5:36302800-36305600	Weak transcription	Fetal Intestine Large	intestine
24	chr5:36302800-36305600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr5:36302800-36305600	Weak transcription	Ovary	ovary
26	chr5:36302800-36305600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr5:36302800-36305600	Weak transcription	NH-A	brain
28	chr5:36302800-36305600	Weak transcription	NHDF-Ad	bronchial
29	chr5:36302800-36305600	Weak transcription	NHLF	lung
30	chr5:36302800-36305800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr5:36302800-36305800	Weak transcription	Small Intestine	intestine
32	chr5:36302800-36305800	Weak transcription	HSMM	muscle
33	chr5:36303000-36303200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr5:36303000-36303200	Enhancers	Colon Smooth Muscle	Colon
35	chr5:36303000-36303200	Enhancers	Rectal Smooth Muscle	rectum
36	chr5:36303000-36303400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr5:36303000-36303400	Enhancers	Brain Hippocampus Middle	brain
38	chr5:36303000-36303400	Enhancers	Fetal Lung	lung
39	chr5:36303000-36304200	Weak transcription	Aorta	Aorta
40	chr5:36303000-36304400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr5:36303000-36305600	Weak transcription	Brain Cingulate Gyrus	brain
42	chr5:36303000-36305800	Weak transcription	Adipose Nuclei	Adipose
43	chr5:36303000-36305800	Weak transcription	Brain Substantia Nigra	brain
44	chr5:36303000-36305800	Weak transcription	Stomach Smooth Muscle	stomach
45	chr5:36303000-36305800	Weak transcription	Hela-S3	cervix
46	chr5:36303000-36305800	Weak transcription	Osteobl	bone

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