The 2.0 version of rSNPBase

Variant report

Variant rs12054958
Chromosome Location chr5:36231122-36231123
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:36196600-36236600 Weak transcription GM12878-XiMat blood
2 chr5:36198000-36238400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
3 chr5:36200200-36239400 Weak transcription Fetal Brain Male brain
4 chr5:36201400-36240000 Weak transcription Primary T helper naive cells from peripheral blood blood
5 chr5:36213200-36237000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
6 chr5:36215200-36236600 Weak transcription Small Intestine intestine
7 chr5:36215800-36237800 Weak transcription HMEC breast
8 chr5:36221200-36238800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
9 chr5:36221600-36232600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
10 chr5:36221600-36235600 Weak transcription Fetal Kidney kidney
11 chr5:36221600-36236200 Weak transcription Fetal Intestine Small intestine
12 chr5:36221600-36238600 Weak transcription Fetal Stomach stomach
13 chr5:36221600-36239800 Weak transcription Placenta Amnion Placenta Amnion
14 chr5:36225200-36237800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
15 chr5:36225400-36237800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr5:36225400-36237800 Weak transcription Sigmoid Colon Sigmoid Colon
17 chr5:36225600-36239800 Weak transcription Primary hematopoietic stem cells blood
18 chr5:36225800-36237800 Weak transcription Fetal Lung lung
19 chr5:36226000-36233000 Weak transcription Fetal Adrenal Gland Adrenal Gland
20 chr5:36226000-36236600 Weak transcription Fetal Intestine Large intestine
21 chr5:36226000-36237000 Weak transcription Brain Inferior Temporal Lobe brain
22 chr5:36226000-36237200 Weak transcription Brain Cingulate Gyrus brain
23 chr5:36226000-36239800 Weak transcription Fetal Brain Female brain
24 chr5:36226000-36240400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
25 chr5:36226000-36240400 Weak transcription Fetal Muscle Trunk muscle
26 chr5:36226200-36233600 Weak transcription Primary T cells fromperipheralblood blood
27 chr5:36226200-36237000 Weak transcription Primary hematopoietic stem cells short term culture blood
28 chr5:36226400-36239200 Weak transcription Brain Angular Gyrus brain
29 chr5:36226600-36236600 Weak transcription Primary B cells from peripheral blood blood
30 chr5:36226600-36237000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr5:36226600-36237800 Weak transcription Brain Anterior Caudate brain
32 chr5:36226600-36237800 Weak transcription Duodenum Mucosa Duodenum
33 chr5:36226600-36237800 Weak transcription Stomach Smooth Muscle stomach
34 chr5:36226600-36237800 Weak transcription Dnd41 blood
35 chr5:36226600-36238000 Weak transcription Rectal Mucosa Donor 31 rectum
36 chr5:36226600-36239200 Weak transcription Primary T regulatory cells fromperipheralblood blood
37 chr5:36226600-36239400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
38 chr5:36226600-36240000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
39 chr5:36226800-36236800 Weak transcription Primary monocytes fromperipheralblood blood
40 chr5:36226800-36237400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr5:36226800-36237800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
42 chr5:36226800-36237800 Weak transcription Hela-S3 cervix
43 chr5:36226800-36238000 Weak transcription Adipose Nuclei Adipose
44 chr5:36226800-36238200 Weak transcription Rectal Mucosa Donor 29 rectum
45 chr5:36227000-36236600 Weak transcription Monocytes-CD14+_RO01746 blood
46 chr5:36227000-36237800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
47 chr5:36227000-36239200 Weak transcription Primary T helper cells PMA-I stimulated --
48 chr5:36228600-36237000 Weak transcription NHEK skin
49 chr5:36228800-36232800 Weak transcription Stomach Mucosa stomach
50 chr5:36229000-36236800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived

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Last update: Aug 31, 2015