Variant report

Variant	rs6886540
Chromosome Location	chr5:36270928-36270929
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36210257..36211842-chr5:36269897..36271845,2	K562	blood:

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs10452459	1.00[EUR][1000 genomes]
rs10461961	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs10461962	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs10461965	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs10512641	1.00[EUR][1000 genomes]
rs10512642	0.82[ASN][1000 genomes]
rs10941282	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs10941283	0.84[ASN][1000 genomes]
rs10941284	0.85[CHB][hapmap];0.84[ASN][1000 genomes]
rs11949914	1.00[EUR][1000 genomes]
rs11952545	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11953540	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11959495	1.00[EUR][1000 genomes]
rs12054662	0.82[ASN][1000 genomes]
rs12054682	0.87[CHB][hapmap];0.80[ASN][1000 genomes]
rs12054958	0.81[CHB][hapmap];0.91[CHD][hapmap];0.82[ASN][1000 genomes]
rs12055219	0.81[CHB][hapmap];0.82[ASN][1000 genomes]
rs12109571	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12654720	0.98[ASN][1000 genomes]
rs12656102	1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs12657110	0.82[ASN][1000 genomes]
rs12658779	1.00[CHB][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs1364013	0.82[ASN][1000 genomes]
rs1364014	0.82[ASN][1000 genomes]
rs1364015	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs1500223	1.00[EUR][1000 genomes]
rs1500225	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16902710	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16902726	1.00[EUR][1000 genomes]
rs16902747	1.00[EUR][1000 genomes]
rs16902765	1.00[EUR][1000 genomes]
rs16902789	1.00[EUR][1000 genomes]
rs16902793	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs16902797	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs16902812	0.87[CHB][hapmap];0.91[CHD][hapmap];0.82[ASN][1000 genomes]
rs16902813	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs16902814	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16902827	0.87[CHB][hapmap];0.91[CHD][hapmap];0.82[ASN][1000 genomes]
rs16902829	1.00[EUR][1000 genomes]
rs16902836	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs16902845	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs16902858	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16902871	0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16902872	0.94[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs16902910	0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16902911	1.00[CHB][hapmap];0.81[JPT][hapmap];0.98[ASN][1000 genomes]
rs16902936	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1874182	1.00[EUR][1000 genomes]
rs1965840	1.00[EUR][1000 genomes]
rs2172777	1.00[EUR][1000 genomes]
rs2362981	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs3849785	0.87[CHB][hapmap];0.81[ASN][1000 genomes]
rs3849787	0.82[ASN][1000 genomes]
rs3853244	1.00[EUR][1000 genomes]
rs3853245	1.00[EUR][1000 genomes]
rs3895887	1.00[EUR][1000 genomes]
rs4022390	1.00[EUR][1000 genomes]
rs4869470	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs4869471	0.87[CHB][hapmap];0.91[CHD][hapmap];0.82[ASN][1000 genomes]
rs4869472	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs4869624	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs4869627	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs4869628	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs4869629	0.82[ASN][1000 genomes]
rs4869630	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs4869633	0.92[CHB][hapmap];0.82[JPT][hapmap];0.96[ASN][1000 genomes]
rs4869637	1.00[CHB][hapmap];0.96[CHD][hapmap];0.81[JPT][hapmap];0.97[ASN][1000 genomes]
rs56815690	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57472443	1.00[EUR][1000 genomes]
rs58131800	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59754678	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60083069	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61209349	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61656343	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6451267	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6860085	0.88[ASW][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes]
rs6860896	1.00[EUR][1000 genomes]
rs6866069	1.00[EUR][1000 genomes]
rs6867280	1.00[EUR][1000 genomes]
rs6869324	1.00[EUR][1000 genomes]
rs6872883	1.00[EUR][1000 genomes]
rs6874771	1.00[EUR][1000 genomes]
rs6875875	1.00[EUR][1000 genomes]
rs6878587	1.00[EUR][1000 genomes]
rs6881555	1.00[EUR][1000 genomes]
rs6887103	1.00[EUR][1000 genomes]
rs6894587	1.00[EUR][1000 genomes]
rs6896114	1.00[EUR][1000 genomes]
rs6896401	1.00[EUR][1000 genomes]
rs6896576	1.00[EUR][1000 genomes]
rs6897845	1.00[EUR][1000 genomes]
rs6898451	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73081933	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73081942	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73081945	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73748793	1.00[EUR][1000 genomes]
rs73751620	1.00[EUR][1000 genomes]
rs73751622	1.00[EUR][1000 genomes]
rs766065	1.00[EUR][1000 genomes]
rs7705125	1.00[EUR][1000 genomes]
rs7709624	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7710047	1.00[EUR][1000 genomes]
rs7718407	1.00[EUR][1000 genomes]
rs7719226	1.00[EUR][1000 genomes]
rs7719889	1.00[EUR][1000 genomes]
rs7723314	1.00[EUR][1000 genomes]
rs7725596	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7730301	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7730829	1.00[EUR][1000 genomes]
rs7733484	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs878608	1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs921022	1.00[EUR][1000 genomes]
rs9637790	0.82[ASN][1000 genomes]
rs991033	0.82[ASN][1000 genomes]
rs991034	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases
2	nsv1015638	chr5:36203646-36312576	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
3	nsv881598	chr5:36248752-36382802	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2762515	chr5:36270305-36272663	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36251800-36274400	Weak transcription	Brain Anterior Caudate	brain
2	chr5:36254000-36274400	Weak transcription	Aorta	Aorta
3	chr5:36261600-36277000	Weak transcription	Pancreas	Pancrea
4	chr5:36262800-36283800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr5:36266600-36274400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:36268400-36271200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:36269200-36271400	Enhancers	Fetal Lung	lung
8	chr5:36269600-36279600	Weak transcription	Brain Angular Gyrus	brain
9	chr5:36269800-36275400	Enhancers	Liver	Liver
10	chr5:36270200-36271400	Enhancers	Adipose Nuclei	Adipose
11	chr5:36270800-36271000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr5:36270800-36271400	Enhancers	Fetal Heart	heart

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