Variant report

Variant	rs2362981
Chromosome Location	chr5:36271628-36271629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36210257..36211842-chr5:36269897..36271845,2	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10452459	1.00[EUR][1000 genomes]
rs10512641	1.00[EUR][1000 genomes]
rs11949914	1.00[EUR][1000 genomes]
rs11952545	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11953540	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11959495	1.00[EUR][1000 genomes]
rs12109571	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1500223	1.00[EUR][1000 genomes]
rs1500225	1.00[EUR][1000 genomes]
rs16902710	1.00[EUR][1000 genomes]
rs16902726	1.00[EUR][1000 genomes]
rs16902747	1.00[EUR][1000 genomes]
rs16902765	1.00[EUR][1000 genomes]
rs16902789	1.00[EUR][1000 genomes]
rs16902814	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16902829	1.00[EUR][1000 genomes]
rs16902858	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16902872	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs16902910	1.00[EUR][1000 genomes]
rs16902936	0.93[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1874182	1.00[EUR][1000 genomes]
rs1965840	1.00[EUR][1000 genomes]
rs2172777	1.00[EUR][1000 genomes]
rs3853244	1.00[EUR][1000 genomes]
rs3853245	1.00[EUR][1000 genomes]
rs3895887	1.00[EUR][1000 genomes]
rs4022390	1.00[EUR][1000 genomes]
rs56815690	1.00[EUR][1000 genomes]
rs57472443	1.00[EUR][1000 genomes]
rs58131800	1.00[EUR][1000 genomes]
rs59754678	1.00[EUR][1000 genomes]
rs60083069	1.00[EUR][1000 genomes]
rs61209349	1.00[EUR][1000 genomes]
rs61656343	1.00[EUR][1000 genomes]
rs6451267	1.00[EUR][1000 genomes]
rs6860085	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6860896	1.00[EUR][1000 genomes]
rs6866069	1.00[EUR][1000 genomes]
rs6867280	1.00[EUR][1000 genomes]
rs6869324	1.00[EUR][1000 genomes]
rs6872883	1.00[EUR][1000 genomes]
rs6874771	1.00[EUR][1000 genomes]
rs6875875	1.00[EUR][1000 genomes]
rs6878587	1.00[EUR][1000 genomes]
rs6881555	1.00[EUR][1000 genomes]
rs6886540	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6887103	1.00[EUR][1000 genomes]
rs6894587	1.00[EUR][1000 genomes]
rs6896114	1.00[EUR][1000 genomes]
rs6896401	1.00[EUR][1000 genomes]
rs6896576	1.00[EUR][1000 genomes]
rs6897845	1.00[EUR][1000 genomes]
rs6898451	1.00[EUR][1000 genomes]
rs73081933	1.00[EUR][1000 genomes]
rs73081942	1.00[EUR][1000 genomes]
rs73081945	1.00[EUR][1000 genomes]
rs73748793	1.00[EUR][1000 genomes]
rs73751620	1.00[EUR][1000 genomes]
rs73751622	1.00[EUR][1000 genomes]
rs766065	1.00[EUR][1000 genomes]
rs7705125	1.00[EUR][1000 genomes]
rs7709624	1.00[EUR][1000 genomes]
rs7710047	1.00[EUR][1000 genomes]
rs7718407	1.00[EUR][1000 genomes]
rs7719226	1.00[EUR][1000 genomes]
rs7719889	1.00[EUR][1000 genomes]
rs7723314	1.00[EUR][1000 genomes]
rs7725596	1.00[EUR][1000 genomes]
rs7730301	1.00[EUR][1000 genomes]
rs7730829	1.00[EUR][1000 genomes]
rs7733484	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs921022	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases
2	nsv1015638	chr5:36203646-36312576	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
3	nsv881598	chr5:36248752-36382802	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2762515	chr5:36270305-36272663	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36251800-36274400	Weak transcription	Brain Anterior Caudate	brain
2	chr5:36254000-36274400	Weak transcription	Aorta	Aorta
3	chr5:36261600-36277000	Weak transcription	Pancreas	Pancrea
4	chr5:36262800-36283800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr5:36266600-36274400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:36269600-36279600	Weak transcription	Brain Angular Gyrus	brain
7	chr5:36269800-36275400	Enhancers	Liver	Liver
8	chr5:36271000-36272600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:36271200-36272800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:36271200-36276800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr5:36271400-36272400	Weak transcription	Fetal Lung	lung
12	chr5:36271400-36273400	Weak transcription	Adipose Nuclei	Adipose

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