Variant report

Variant	rs6874771
Chromosome Location	chr5:36164598-36164599
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:36164116..36166672-chr5:36172542..36174152,2	K562	blood:
2	chr5:36160015..36162178-chr5:36164182..36166735,3	K562	blood:
3	chr5:36162218..36166672-chr5:36172518..36174152,4	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10452459	1.00[EUR][1000 genomes]
rs10512641	1.00[EUR][1000 genomes]
rs11949914	1.00[EUR][1000 genomes]
rs11952545	0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs11953540	1.00[EUR][1000 genomes]
rs11959495	1.00[EUR][1000 genomes]
rs11960054	1.00[EUR][1000 genomes]
rs12109571	0.89[YRI][hapmap];1.00[EUR][1000 genomes]
rs1500223	1.00[EUR][1000 genomes]
rs1500225	1.00[EUR][1000 genomes]
rs16902710	1.00[EUR][1000 genomes]
rs16902726	1.00[EUR][1000 genomes]
rs16902747	0.90[YRI][hapmap];1.00[EUR][1000 genomes]
rs16902765	0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs16902789	1.00[EUR][1000 genomes]
rs16902814	1.00[EUR][1000 genomes]
rs16902829	1.00[EUR][1000 genomes]
rs16902858	1.00[EUR][1000 genomes]
rs16902910	1.00[EUR][1000 genomes]
rs16902936	1.00[EUR][1000 genomes]
rs1874182	1.00[EUR][1000 genomes]
rs1965840	1.00[EUR][1000 genomes]
rs2172777	1.00[EUR][1000 genomes]
rs2362981	1.00[EUR][1000 genomes]
rs3853244	1.00[EUR][1000 genomes]
rs3853245	0.90[YRI][hapmap];1.00[EUR][1000 genomes]
rs3895887	1.00[EUR][1000 genomes]
rs4022390	1.00[EUR][1000 genomes]
rs56815690	1.00[EUR][1000 genomes]
rs57472443	1.00[EUR][1000 genomes]
rs58131800	1.00[EUR][1000 genomes]
rs59754678	1.00[EUR][1000 genomes]
rs60083069	1.00[EUR][1000 genomes]
rs61209349	1.00[EUR][1000 genomes]
rs61656343	1.00[EUR][1000 genomes]
rs6451255	1.00[EUR][1000 genomes]
rs6451267	1.00[EUR][1000 genomes]
rs6860896	0.90[YRI][hapmap];1.00[EUR][1000 genomes]
rs6866069	1.00[EUR][1000 genomes]
rs6867280	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6869324	1.00[EUR][1000 genomes]
rs6872883	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6875875	1.00[EUR][1000 genomes]
rs6878587	1.00[EUR][1000 genomes]
rs6881555	1.00[EUR][1000 genomes]
rs6886540	1.00[EUR][1000 genomes]
rs6887103	1.00[EUR][1000 genomes]
rs6894587	1.00[EUR][1000 genomes]
rs6896114	1.00[EUR][1000 genomes]
rs6896401	1.00[EUR][1000 genomes]
rs6896576	1.00[EUR][1000 genomes]
rs6897845	1.00[EUR][1000 genomes]
rs6898451	1.00[EUR][1000 genomes]
rs73081933	1.00[EUR][1000 genomes]
rs73081942	1.00[EUR][1000 genomes]
rs73081945	1.00[EUR][1000 genomes]
rs73748793	1.00[EUR][1000 genomes]
rs73751620	1.00[EUR][1000 genomes]
rs73751622	1.00[EUR][1000 genomes]
rs766065	1.00[EUR][1000 genomes]
rs7702340	1.00[EUR][1000 genomes]
rs7705125	0.93[YRI][hapmap];1.00[EUR][1000 genomes]
rs7709624	1.00[EUR][1000 genomes]
rs7710047	1.00[EUR][1000 genomes]
rs7718407	1.00[EUR][1000 genomes]
rs7719226	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs7723314	0.86[YRI][hapmap];1.00[EUR][1000 genomes]
rs7725596	1.00[EUR][1000 genomes]
rs7730301	1.00[EUR][1000 genomes]
rs7730829	1.00[EUR][1000 genomes]
rs7733484	1.00[EUR][1000 genomes]
rs921022	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36153800-36184400	Strong transcription	HUES64 Cell Line	embryonic stem cell
2	chr5:36154000-36168200	Strong transcription	Primary T cells from cord blood	blood
3	chr5:36154000-36168200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr5:36154000-36175400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
5	chr5:36154000-36175600	Strong transcription	H1 Cell Line	embryonic stem cell
6	chr5:36154000-36175600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:36154000-36184200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:36154200-36168400	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr5:36154200-36179000	Strong transcription	A549	lung
10	chr5:36154200-36184400	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr5:36154200-36184400	Strong transcription	Fetal Thymus	thymus
12	chr5:36154400-36164800	Strong transcription	Cortex derived primary cultured neurospheres	brain
13	chr5:36154400-36175000	Strong transcription	Primary B cells from peripheral blood	blood
14	chr5:36154400-36175200	Strong transcription	Thymus	Thymus
15	chr5:36154400-36184400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr5:36154400-36210800	Weak transcription	Small Intestine	intestine
17	chr5:36154600-36168000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr5:36154600-36168200	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr5:36154600-36176000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr5:36155200-36176000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr5:36155800-36166000	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr5:36156000-36176400	Strong transcription	Primary B cells from cord blood	blood
23	chr5:36156600-36175400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr5:36156600-36176000	Strong transcription	K562	blood
25	chr5:36156600-36178000	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr5:36156800-36173600	Weak transcription	Psoas Muscle	Psoas
27	chr5:36156800-36175400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr5:36157000-36172600	Strong transcription	Fetal Lung	lung
29	chr5:36157600-36164800	Strong transcription	Lung	lung
30	chr5:36157800-36169200	Strong transcription	NHLF	lung
31	chr5:36158200-36164800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr5:36158200-36175800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr5:36158200-36183200	Strong transcription	Hela-S3	cervix
34	chr5:36158400-36164600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr5:36158400-36182000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr5:36158400-36184400	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr5:36158600-36164800	Strong transcription	Fetal Stomach	stomach
38	chr5:36158600-36170800	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr5:36158600-36176000	Strong transcription	Osteobl	bone
40	chr5:36158600-36184600	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr5:36158600-36185600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr5:36158800-36164800	Strong transcription	Aorta	Aorta
43	chr5:36158800-36165000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr5:36158800-36169200	Strong transcription	Stomach Smooth Muscle	stomach
45	chr5:36158800-36175200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr5:36158800-36175400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr5:36159000-36165400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr5:36159000-36170000	Strong transcription	Brain Germinal Matrix	brain
49	chr5:36159000-36170000	Strong transcription	Fetal Brain Female	brain
50	chr5:36159200-36175200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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