The 2.0 version of rSNPBase

Variant report

Variant rs10452459
Chromosome Location chr5:36238353-36238354
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:81 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:36198000-36238400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
2 chr5:36200200-36239400 Weak transcription Fetal Brain Male brain
3 chr5:36201400-36240000 Weak transcription Primary T helper naive cells from peripheral blood blood
4 chr5:36221200-36238800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
5 chr5:36221600-36238600 Weak transcription Fetal Stomach stomach
6 chr5:36221600-36239800 Weak transcription Placenta Amnion Placenta Amnion
7 chr5:36225600-36239800 Weak transcription Primary hematopoietic stem cells blood
8 chr5:36226000-36239800 Weak transcription Fetal Brain Female brain
9 chr5:36226000-36240400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
10 chr5:36226000-36240400 Weak transcription Fetal Muscle Trunk muscle
11 chr5:36226400-36239200 Weak transcription Brain Angular Gyrus brain
12 chr5:36226600-36239200 Weak transcription Primary T regulatory cells fromperipheralblood blood
13 chr5:36226600-36239400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
14 chr5:36226600-36240000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
15 chr5:36227000-36239200 Weak transcription Primary T helper cells PMA-I stimulated --
16 chr5:36230600-36239000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
17 chr5:36231400-36238600 Weak transcription HSMMtube muscle
18 chr5:36231400-36239600 Weak transcription HSMM muscle
19 chr5:36231400-36240000 Weak transcription Fetal Muscle Leg muscle
20 chr5:36231800-36239800 Weak transcription Brain Substantia Nigra brain
21 chr5:36233600-36241000 Weak transcription Gastric stomach
22 chr5:36235800-36239800 Weak transcription Fetal Kidney kidney
23 chr5:36236200-36240000 Enhancers Fetal Intestine Small intestine
24 chr5:36236400-36238600 Enhancers Cortex derived primary cultured neurospheres brain
25 chr5:36236400-36239000 Enhancers Colon Smooth Muscle Colon
26 chr5:36236400-36239200 Enhancers HepG2 liver
27 chr5:36236600-36238600 Enhancers Small Intestine intestine
28 chr5:36236600-36240200 Enhancers Fetal Intestine Large intestine
29 chr5:36236800-36238600 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
30 chr5:36237000-36239800 Enhancers Brain Hippocampus Middle brain
31 chr5:36237000-36239800 Enhancers Rectal Smooth Muscle rectum
32 chr5:36237000-36240000 Enhancers NHEK skin
33 chr5:36237000-36240400 Weak transcription Monocytes-CD14+_RO01746 blood
34 chr5:36237000-36240600 Enhancers Breast Myoepithelial Primary Cells Breast
35 chr5:36237200-36238400 Weak transcription GM12878-XiMat blood
36 chr5:36237200-36239600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
37 chr5:36237200-36239800 Weak transcription Primary B cells from peripheral blood blood
38 chr5:36237200-36240000 Enhancers Brain Cingulate Gyrus brain
39 chr5:36237200-36240600 Weak transcription Primary monocytes fromperipheralblood blood
40 chr5:36237400-36238400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr5:36237400-36238400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
42 chr5:36237400-36238400 Flanking Active TSS K562 blood
43 chr5:36237400-36239000 Weak transcription Primary hematopoietic stem cells short term culture blood
44 chr5:36237400-36239200 Enhancers Brain Germinal Matrix brain
45 chr5:36237400-36240600 Weak transcription Primary T cells fromperipheralblood blood
46 chr5:36237600-36239800 Enhancers Duodenum Smooth Muscle Duodenum
47 chr5:36237600-36240000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
48 chr5:36237600-36240200 Enhancers Fetal Adrenal Gland Adrenal Gland
49 chr5:36237600-36240800 Flanking Active TSS Liver Liver
50 chr5:36237800-36238400 Enhancers Brain Anterior Caudate brain

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Last update: Aug 31, 2015