Variant report

Variant	rs16902710
Chromosome Location	chr5:36071597-36071598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr5:36071411-36071624	K562	blood:	n/a	chr5:36071472-36071483 chr5:36071469-36071483 chr5:36071463-36071483 chr5:36071473-36071487 chr5:36071470-36071484 chr5:36071471-36071481 chr5:36071477-36071491 chr5:36071475-36071488 chr5:36071469-36071489 chr5:36071468-36071482 chr5:36071469-36071482 chr5:36071475-36071488 chr5:36071475-36071488 chr5:36071470-36071483 chr5:36071471-36071485 chr5:36071477-36071487 chr5:36071467-36071481 chr5:36071474-36071488
2	CTCF	chr5:36071540-36071690	HMF	breast:	n/a	n/a

Variant related genes	Relation type
UGT3A2	TF binding region

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10064778	1.00[EUR][1000 genomes]
rs10452459	1.00[EUR][1000 genomes]
rs10512641	1.00[EUR][1000 genomes]
rs11949914	1.00[EUR][1000 genomes]
rs11952545	0.91[ASW][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11953540	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11959495	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11960054	1.00[EUR][1000 genomes]
rs12109571	0.91[ASW][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1500223	1.00[EUR][1000 genomes]
rs1500225	1.00[EUR][1000 genomes]
rs16902726	1.00[EUR][1000 genomes]
rs16902747	1.00[EUR][1000 genomes]
rs16902765	1.00[EUR][1000 genomes]
rs16902789	1.00[EUR][1000 genomes]
rs16902814	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16902829	1.00[EUR][1000 genomes]
rs16902858	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16902872	1.00[TSI][hapmap]
rs16902910	1.00[EUR][1000 genomes]
rs1874182	1.00[EUR][1000 genomes]
rs1965840	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2172777	1.00[EUR][1000 genomes]
rs2362981	1.00[EUR][1000 genomes]
rs3853244	1.00[EUR][1000 genomes]
rs3853245	1.00[EUR][1000 genomes]
rs3895887	1.00[EUR][1000 genomes]
rs4022390	1.00[EUR][1000 genomes]
rs56815690	1.00[EUR][1000 genomes]
rs57472443	1.00[EUR][1000 genomes]
rs58131800	1.00[EUR][1000 genomes]
rs59754678	1.00[EUR][1000 genomes]
rs60083069	1.00[EUR][1000 genomes]
rs61209349	1.00[EUR][1000 genomes]
rs61656343	1.00[EUR][1000 genomes]
rs6451255	1.00[EUR][1000 genomes]
rs6451267	1.00[EUR][1000 genomes]
rs6860085	1.00[TSI][hapmap]
rs6860896	1.00[EUR][1000 genomes]
rs6862072	1.00[TSI][hapmap]
rs6866069	1.00[EUR][1000 genomes]
rs6867280	1.00[EUR][1000 genomes]
rs6869324	1.00[EUR][1000 genomes]
rs6872883	1.00[EUR][1000 genomes]
rs6873241	1.00[EUR][1000 genomes]
rs6874771	1.00[EUR][1000 genomes]
rs6875875	1.00[EUR][1000 genomes]
rs6878587	1.00[EUR][1000 genomes]
rs6881555	1.00[EUR][1000 genomes]
rs6886540	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6887103	1.00[EUR][1000 genomes]
rs6894587	1.00[EUR][1000 genomes]
rs6896114	1.00[EUR][1000 genomes]
rs6896401	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6896576	1.00[EUR][1000 genomes]
rs6897845	1.00[EUR][1000 genomes]
rs6898451	1.00[EUR][1000 genomes]
rs73081933	1.00[EUR][1000 genomes]
rs73081942	1.00[EUR][1000 genomes]
rs73081945	1.00[EUR][1000 genomes]
rs73748793	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751620	1.00[EUR][1000 genomes]
rs73751622	1.00[EUR][1000 genomes]
rs766065	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7702340	1.00[EUR][1000 genomes]
rs7703463	1.00[EUR][1000 genomes]
rs7705125	1.00[EUR][1000 genomes]
rs7709624	1.00[EUR][1000 genomes]
rs7710047	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7718407	1.00[EUR][1000 genomes]
rs7719226	1.00[EUR][1000 genomes]
rs7723314	1.00[EUR][1000 genomes]
rs7725596	1.00[EUR][1000 genomes]
rs7730301	1.00[EUR][1000 genomes]
rs7730829	1.00[EUR][1000 genomes]
rs7733484	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs921022	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36067200-36071800	Weak transcription	Spleen	Spleen
2	chr5:36067200-36090000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:36067800-36078600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr5:36068000-36073400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr5:36070600-36072000	Enhancers	Pancreas	Pancrea
6	chr5:36071000-36071600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:36071000-36071600	Active TSS	NHLF	lung
8	chr5:36071000-36071800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:36071000-36071800	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr5:36071000-36071800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr5:36071000-36071800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr5:36071000-36072000	Flanking Active TSS	Dnd41	blood
13	chr5:36071200-36071600	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:36071200-36071600	Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr5:36071200-36071600	Active TSS	Primary T cells fromperipheralblood	blood
16	chr5:36071200-36071600	Active TSS	Primary T helper cells fromperipheralblood	blood
17	chr5:36071200-36071600	Active TSS	Primary T killer memory cells from peripheral blood	blood
18	chr5:36071200-36071600	Active TSS	Liver	Liver
19	chr5:36071200-36071600	Active TSS	Thymus	Thymus
20	chr5:36071200-36071600	Bivalent/Poised TSS	A549	lung
21	chr5:36071200-36071600	Bivalent/Poised TSS	HSMM	muscle
22	chr5:36071200-36071600	Bivalent/Poised TSS	HUVEC	blood vessel
23	chr5:36071200-36071600	Active TSS	Monocytes-CD14+_RO01746	blood
24	chr5:36071200-36071800	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr5:36071200-36071800	Flanking Active TSS	Primary B cells from peripheral blood	blood
26	chr5:36071200-36071800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
27	chr5:36071200-36071800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
28	chr5:36071200-36071800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
29	chr5:36071200-36071800	Active TSS	Adipose Nuclei	Adipose
30	chr5:36071200-36071800	Active TSS	Duodenum Smooth Muscle	Duodenum
31	chr5:36071200-36071800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
32	chr5:36071200-36071800	Active TSS	Rectal Mucosa Donor 29	rectum
33	chr5:36071200-36071800	Active TSS	Rectal Smooth Muscle	rectum
34	chr5:36071200-36071800	Flanking Active TSS	GM12878-XiMat	blood
35	chr5:36071200-36071800	Bivalent/Poised TSS	Hela-S3	cervix
36	chr5:36071200-36071800	Active TSS	HMEC	breast
37	chr5:36071200-36071800	Active TSS	NHDF-Ad	bronchial
38	chr5:36071200-36071800	Bivalent/Poised TSS	Osteobl	bone
39	chr5:36071400-36071600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
40	chr5:36071400-36071600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr5:36071400-36071600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
42	chr5:36071400-36071600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
43	chr5:36071400-36071800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
44	chr5:36071400-36071800	Flanking Active TSS	Primary T cells from cord blood	blood
45	chr5:36071400-36071800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
46	chr5:36071400-36071800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
47	chr5:36071400-36071800	Active TSS	Primary T helper cells PMA-I stimulated	--
48	chr5:36071400-36071800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr5:36071400-36071800	Flanking Active TSS	Fetal Thymus	thymus
50	chr5:36071400-36071800	Flanking Active TSS	Ovary	ovary

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