Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36240055..36243767-chr5:36259850..36262015,3	K562	blood:
2	chr5:36240055..36243830-chr5:36256349..36261639,8	K562	blood:

Variant related genes	Relation type
ENSG00000152620	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11952545	1.00[TSI][hapmap]
rs11953540	1.00[TSI][hapmap]
rs12109571	1.00[TSI][hapmap]
rs1500225	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16902710	1.00[TSI][hapmap]
rs16902814	1.00[TSI][hapmap]
rs16902858	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs16902872	0.94[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16902910	0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16902936	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2362981	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs56815690	0.87[AFR][1000 genomes]
rs58131800	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59754678	0.93[AFR][1000 genomes]
rs60083069	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61209349	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61656343	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6451267	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6886540	0.88[ASW][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes]
rs6898451	0.93[AFR][1000 genomes]
rs73081933	0.89[AFR][1000 genomes]
rs73081942	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73081945	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7709624	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7725596	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7730301	0.96[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7733484	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases
2	nsv1015638	chr5:36203646-36312576	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
3	nsv881598	chr5:36248752-36382802	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36251800-36274400	Weak transcription	Brain Anterior Caudate	brain
2	chr5:36254000-36274400	Weak transcription	Aorta	Aorta
3	chr5:36260200-36269800	Weak transcription	Liver	Liver

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