Variant report

Variant	rs60083069
Chromosome Location	chr5:36248501-36248502
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:36239741..36244027-chr5:36245562..36251114,9	MCF-7	breast:
2	chr5:36246082..36249098-chr5:36250813..36253857,3	MCF-7	breast:
3	chr5:36246768..36250424-chr5:36250842..36254157,3	MCF-7	breast:
4	chr5:36239787..36244409-chr5:36245877..36249141,6	MCF-7	breast:
5	chr5:36244423..36246037-chr5:36247786..36250597,2	MCF-7	breast:
6	chr5:36246613..36249603-chr5:36252425..36254009,2	K562	blood:

Variant related genes	Relation type
ENSG00000152620	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10452459	1.00[EUR][1000 genomes]
rs10512641	1.00[EUR][1000 genomes]
rs11949914	1.00[EUR][1000 genomes]
rs11952545	1.00[EUR][1000 genomes]
rs11953540	1.00[EUR][1000 genomes]
rs11959495	1.00[EUR][1000 genomes]
rs11960054	1.00[EUR][1000 genomes]
rs12109571	1.00[EUR][1000 genomes]
rs1500223	1.00[EUR][1000 genomes]
rs1500225	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16902710	1.00[EUR][1000 genomes]
rs16902726	1.00[EUR][1000 genomes]
rs16902747	1.00[EUR][1000 genomes]
rs16902765	1.00[EUR][1000 genomes]
rs16902789	1.00[EUR][1000 genomes]
rs16902814	1.00[EUR][1000 genomes]
rs16902829	1.00[EUR][1000 genomes]
rs16902858	1.00[EUR][1000 genomes]
rs16902872	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16902910	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16902936	1.00[EUR][1000 genomes]
rs1874182	1.00[EUR][1000 genomes]
rs1965840	1.00[EUR][1000 genomes]
rs2172777	1.00[EUR][1000 genomes]
rs2362981	1.00[EUR][1000 genomes]
rs3853244	1.00[EUR][1000 genomes]
rs3853245	1.00[EUR][1000 genomes]
rs3895887	1.00[EUR][1000 genomes]
rs4022390	1.00[EUR][1000 genomes]
rs56815690	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57472443	1.00[EUR][1000 genomes]
rs58131800	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59754678	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61209349	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61656343	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6451255	1.00[EUR][1000 genomes]
rs6451267	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6860085	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6860896	1.00[EUR][1000 genomes]
rs6866069	1.00[EUR][1000 genomes]
rs6867280	1.00[EUR][1000 genomes]
rs6869324	1.00[EUR][1000 genomes]
rs6872883	1.00[EUR][1000 genomes]
rs6874771	1.00[EUR][1000 genomes]
rs6875875	1.00[EUR][1000 genomes]
rs6878587	1.00[EUR][1000 genomes]
rs6881555	1.00[EUR][1000 genomes]
rs6886540	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6887103	1.00[EUR][1000 genomes]
rs6894587	1.00[EUR][1000 genomes]
rs6896114	1.00[EUR][1000 genomes]
rs6896401	1.00[EUR][1000 genomes]
rs6896576	1.00[EUR][1000 genomes]
rs6897845	1.00[EUR][1000 genomes]
rs6898451	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73081933	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73081942	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73081945	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73748793	1.00[EUR][1000 genomes]
rs73751620	1.00[EUR][1000 genomes]
rs73751622	1.00[EUR][1000 genomes]
rs766065	1.00[EUR][1000 genomes]
rs7702340	1.00[EUR][1000 genomes]
rs7705125	1.00[EUR][1000 genomes]
rs7709624	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7710047	1.00[EUR][1000 genomes]
rs7718407	1.00[EUR][1000 genomes]
rs7719226	1.00[EUR][1000 genomes]
rs7719889	1.00[EUR][1000 genomes]
rs7723314	1.00[EUR][1000 genomes]
rs7725596	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7730301	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7730829	1.00[EUR][1000 genomes]
rs7733484	1.00[EUR][1000 genomes]
rs921022	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases
2	nsv1015638	chr5:36203646-36312576	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
3	esv3348277	chr5:36247995-36251493	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36243200-36252600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr5:36243400-36252800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:36243400-36253200	Weak transcription	Aorta	Aorta
4	chr5:36245000-36252600	Weak transcription	Liver	Liver
5	chr5:36246200-36253000	Weak transcription	Ovary	ovary

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