Variant report

Variant	rs6872883
Chromosome Location	chr5:36146653-36146654
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36145349..36147928-chr5:36151709..36153883,2	MCF-7	breast:
2	chr5:36144272..36147153-chr5:36240851..36243908,3	K562	blood:

Variant related genes	Relation type
ENSG00000145604	Chromatin interaction
ENSG00000164187	Chromatin interaction
ENSG00000152620	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10452459	1.00[EUR][1000 genomes]
rs10512641	1.00[EUR][1000 genomes]
rs11949914	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11952545	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11953540	1.00[EUR][1000 genomes]
rs11959495	1.00[EUR][1000 genomes]
rs11960054	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12109571	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1500223	1.00[EUR][1000 genomes]
rs1500225	1.00[EUR][1000 genomes]
rs16902710	1.00[EUR][1000 genomes]
rs16902726	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16902747	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16902765	1.00[EUR][1000 genomes]
rs16902789	1.00[EUR][1000 genomes]
rs16902814	1.00[EUR][1000 genomes]
rs16902829	1.00[EUR][1000 genomes]
rs16902858	1.00[EUR][1000 genomes]
rs16902910	1.00[EUR][1000 genomes]
rs16902936	1.00[EUR][1000 genomes]
rs1874182	1.00[EUR][1000 genomes]
rs1965840	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2172777	1.00[EUR][1000 genomes]
rs2362981	1.00[EUR][1000 genomes]
rs3853244	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3853245	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3895887	1.00[EUR][1000 genomes]
rs4022390	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56815690	1.00[EUR][1000 genomes]
rs57472443	1.00[EUR][1000 genomes]
rs58131800	1.00[EUR][1000 genomes]
rs59754678	1.00[EUR][1000 genomes]
rs60083069	1.00[EUR][1000 genomes]
rs61209349	1.00[EUR][1000 genomes]
rs61656343	1.00[EUR][1000 genomes]
rs6451255	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6451267	1.00[EUR][1000 genomes]
rs6860896	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6866069	1.00[EUR][1000 genomes]
rs6867280	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6869324	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6874771	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6875875	1.00[EUR][1000 genomes]
rs6878587	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6881555	1.00[EUR][1000 genomes]
rs6886540	1.00[EUR][1000 genomes]
rs6887103	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6894587	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6896114	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6896401	1.00[EUR][1000 genomes]
rs6896576	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6897845	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6898451	1.00[EUR][1000 genomes]
rs73081933	1.00[EUR][1000 genomes]
rs73081942	1.00[EUR][1000 genomes]
rs73081945	1.00[EUR][1000 genomes]
rs73748793	1.00[EUR][1000 genomes]
rs73751620	1.00[EUR][1000 genomes]
rs73751622	1.00[EUR][1000 genomes]
rs766065	1.00[EUR][1000 genomes]
rs7702340	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7705125	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7709624	1.00[EUR][1000 genomes]
rs7710047	1.00[EUR][1000 genomes]
rs7718407	1.00[EUR][1000 genomes]
rs7719226	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7723314	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7725596	1.00[EUR][1000 genomes]
rs7730301	1.00[EUR][1000 genomes]
rs7730829	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7733484	1.00[EUR][1000 genomes]
rs921022	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases
2	nsv4795	chr5:36106115-36150407	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36101200-36150800	Weak transcription	Colonic Mucosa	Colon
2	chr5:36103600-36147200	Weak transcription	HUVEC	blood vessel
3	chr5:36108400-36150600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr5:36117400-36150200	Weak transcription	Colon Smooth Muscle	Colon
5	chr5:36122400-36147800	Weak transcription	NHDF-Ad	bronchial
6	chr5:36126800-36150400	Weak transcription	Fetal Heart	heart
7	chr5:36128200-36150800	Weak transcription	Psoas Muscle	Psoas
8	chr5:36129400-36149200	Weak transcription	Fetal Brain Male	brain
9	chr5:36129800-36148400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr5:36130000-36147400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr5:36132600-36150800	Weak transcription	Right Ventricle	heart
12	chr5:36134200-36150400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:36136600-36149400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr5:36136600-36150200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:36136600-36150600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr5:36136600-36150600	Weak transcription	HSMMtube	muscle
17	chr5:36139000-36150600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr5:36140400-36150600	Weak transcription	NHLF	lung
19	chr5:36140600-36150400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr5:36140600-36150600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr5:36140600-36150600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr5:36140600-36150600	Weak transcription	Thymus	Thymus
23	chr5:36140600-36150800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr5:36140600-36150800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr5:36140600-36150800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr5:36140600-36150800	Weak transcription	Aorta	Aorta
27	chr5:36140600-36150800	Weak transcription	Brain Angular Gyrus	brain
28	chr5:36140600-36150800	Weak transcription	Gastric	stomach
29	chr5:36140600-36150800	Weak transcription	Small Intestine	intestine
30	chr5:36140600-36150800	Weak transcription	Spleen	Spleen
31	chr5:36140600-36151000	Weak transcription	Esophagus	oesophagus
32	chr5:36140600-36151000	Weak transcription	Left Ventricle	heart
33	chr5:36140600-36151000	Weak transcription	Pancreas	Pancrea
34	chr5:36140600-36151200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr5:36140600-36151200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr5:36140800-36150200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr5:36140800-36150400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr5:36140800-36150600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr5:36140800-36150600	Weak transcription	Brain Anterior Caudate	brain
40	chr5:36140800-36150600	Weak transcription	Brain Cingulate Gyrus	brain
41	chr5:36140800-36150600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr5:36140800-36150800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr5:36140800-36150800	Weak transcription	Fetal Lung	lung
44	chr5:36140800-36150800	Weak transcription	Fetal Stomach	stomach
45	chr5:36140800-36150800	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr5:36140800-36151000	Weak transcription	Lung	lung
47	chr5:36140800-36151000	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr5:36141000-36148000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr5:36141000-36149800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr5:36141000-36150200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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