Variant report

Variant	rs11960054
Chromosome Location	chr5:36046824-36046825
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36043264..36045787-chr5:36046536..36048667,2	MCF-7	breast:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10064778	1.00[EUR][1000 genomes]
rs10452459	1.00[EUR][1000 genomes]
rs10512641	1.00[EUR][1000 genomes]
rs11567757	1.00[EUR][1000 genomes]
rs11949914	1.00[EUR][1000 genomes]
rs11952545	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11953540	1.00[EUR][1000 genomes]
rs11959495	1.00[EUR][1000 genomes]
rs12109571	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1500225	1.00[EUR][1000 genomes]
rs16902710	1.00[EUR][1000 genomes]
rs16902726	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16902747	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16902765	1.00[EUR][1000 genomes]
rs16902789	1.00[EUR][1000 genomes]
rs16902814	1.00[EUR][1000 genomes]
rs16902829	1.00[EUR][1000 genomes]
rs16902858	1.00[EUR][1000 genomes]
rs1874182	1.00[EUR][1000 genomes]
rs1965840	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2172777	1.00[EUR][1000 genomes]
rs3853244	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3853245	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3895887	1.00[EUR][1000 genomes]
rs4022390	1.00[EUR][1000 genomes]
rs56815690	1.00[EUR][1000 genomes]
rs57472443	1.00[EUR][1000 genomes]
rs60083069	1.00[EUR][1000 genomes]
rs61209349	1.00[EUR][1000 genomes]
rs61656343	1.00[EUR][1000 genomes]
rs6451255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6451267	1.00[EUR][1000 genomes]
rs6860896	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6862072	1.00[EUR][1000 genomes]
rs6866069	1.00[EUR][1000 genomes]
rs6867280	1.00[EUR][1000 genomes]
rs6869324	1.00[EUR][1000 genomes]
rs6872883	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6873241	1.00[EUR][1000 genomes]
rs6874771	1.00[EUR][1000 genomes]
rs6875875	1.00[EUR][1000 genomes]
rs6878587	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6881555	1.00[EUR][1000 genomes]
rs6887103	1.00[EUR][1000 genomes]
rs6894587	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6896114	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6896401	1.00[EUR][1000 genomes]
rs6896576	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6897845	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73081933	1.00[EUR][1000 genomes]
rs73081942	1.00[EUR][1000 genomes]
rs73081945	1.00[EUR][1000 genomes]
rs73748793	1.00[EUR][1000 genomes]
rs73751620	1.00[EUR][1000 genomes]
rs73751622	1.00[EUR][1000 genomes]
rs766065	1.00[EUR][1000 genomes]
rs7702340	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7703463	1.00[EUR][1000 genomes]
rs7705125	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7710047	1.00[EUR][1000 genomes]
rs7718407	1.00[EUR][1000 genomes]
rs7719226	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7723314	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7725596	1.00[EUR][1000 genomes]
rs7730301	1.00[EUR][1000 genomes]
rs7730829	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7733484	1.00[EUR][1000 genomes]
rs921022	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347042	chr5:35965538-36049066	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36031200-36047800	Weak transcription	Fetal Thymus	thymus
2	chr5:36041400-36065200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:36041600-36048800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:36041600-36063200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:36041800-36065600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:36042000-36062800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr5:36046800-36051000	Weak transcription	Dnd41	blood

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