Variant report

Variant	rs7703463
Chromosome Location	chr5:35905327-35905328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:35901240..35903407-chr5:35903711..35905458,2	MCF-7	breast:
2	chr5:35903849..35906622-chr5:35908097..35910949,2	MCF-7	breast:
3	chr5:35901524..35904411-chr5:35904982..35906489,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10058723	1.00[CHB][hapmap]
rs10064778	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10065462	0.95[ASN][1000 genomes]
rs10078972	0.95[ASN][1000 genomes]
rs10079517	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11567693	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11567757	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11739191	0.95[ASN][1000 genomes]
rs11949914	1.00[EUR][1000 genomes]
rs11951270	1.00[CHB][hapmap]
rs11953540	1.00[EUR][1000 genomes]
rs11953960	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11954524	1.00[CHB][hapmap]
rs11958548	1.00[CHB][hapmap]
rs11959495	1.00[EUR][1000 genomes]
rs11960054	1.00[EUR][1000 genomes]
rs16902710	1.00[EUR][1000 genomes]
rs1874182	1.00[EUR][1000 genomes]
rs1965840	1.00[EUR][1000 genomes]
rs2172777	1.00[EUR][1000 genomes]
rs2277042	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2277044	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3895887	1.00[EUR][1000 genomes]
rs4022390	1.00[EUR][1000 genomes]
rs4346794	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4361544	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4361545	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6451224	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6451255	1.00[EUR][1000 genomes]
rs6860528	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6860903	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6862072	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6869324	1.00[EUR][1000 genomes]
rs6873241	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6875303	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6875875	1.00[EUR][1000 genomes]
rs6878587	1.00[EUR][1000 genomes]
rs6880287	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6881747	1.00[CHB][hapmap]
rs6887103	1.00[EUR][1000 genomes]
rs6889625	0.95[ASN][1000 genomes]
rs6890572	0.95[ASN][1000 genomes]
rs6896114	1.00[EUR][1000 genomes]
rs6896401	1.00[EUR][1000 genomes]
rs6896576	1.00[EUR][1000 genomes]
rs6897845	1.00[EUR][1000 genomes]
rs73748793	1.00[EUR][1000 genomes]
rs766065	1.00[EUR][1000 genomes]
rs7700501	1.00[CHB][hapmap]
rs7700688	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7702340	1.00[EUR][1000 genomes]
rs7705125	1.00[EUR][1000 genomes]
rs7710047	1.00[EUR][1000 genomes]
rs7719226	1.00[EUR][1000 genomes]
rs7723314	1.00[EUR][1000 genomes]
rs7730148	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7730829	1.00[EUR][1000 genomes]
rs7733484	1.00[EUR][1000 genomes]
rs921022	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471011	chr5:35861068-36003217	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830261	chr5:35863084-36018048	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1025695	chr5:35902486-36036934	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35899000-35906000	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr5:35899000-35909200	Enhancers	Fetal Thymus	thymus
3	chr5:35899200-35905400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr5:35901000-35905400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr5:35904600-35905400	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr5:35904600-35905400	Flanking Active TSS	GM12878-XiMat	blood
7	chr5:35904600-35905600	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr5:35904800-35906200	Enhancers	Thymus	Thymus
9	chr5:35905000-35908200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr5:35905000-35908400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr5:35905200-35908800	Enhancers	Dnd41	blood

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