Variant report

Variant	rs10078972
Chromosome Location	chr5:35830823-35830824
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr5:35830773-35831320	SK-N-SH	brain:	n/a	chr5:35831251-35831258

Variant related genes	Relation type
ENSG00000248969	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10057131	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10064778	1.00[ASN][1000 genomes]
rs10065462	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11567693	1.00[ASN][1000 genomes]
rs11567757	1.00[ASN][1000 genomes]
rs11739191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11742782	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6451224	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6860903	1.00[ASN][1000 genomes]
rs6862072	1.00[ASN][1000 genomes]
rs6873241	1.00[ASN][1000 genomes]
rs6880287	1.00[ASN][1000 genomes]
rs6889625	1.00[ASN][1000 genomes]
rs6890572	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73090262	0.93[EUR][1000 genomes]
rs73090263	0.93[EUR][1000 genomes]
rs7703463	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35819600-35835600	Enhancers	Primary T killer memory cells from peripheral blood	blood
2	chr5:35824000-35831200	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr5:35824400-35835800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr5:35826800-35831600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr5:35829000-35833200	Weak transcription	Osteobl	bone
6	chr5:35829400-35832000	Enhancers	Fetal Thymus	thymus
7	chr5:35829400-35832800	Enhancers	Primary T cells fromperipheralblood	blood
8	chr5:35830600-35831000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:35830600-35831000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
10	chr5:35830600-35831000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
11	chr5:35830600-35831400	Flanking Active TSS	Dnd41	blood
12	chr5:35830600-35832000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
13	chr5:35830600-35832000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
14	chr5:35830600-35832800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr5:35830600-35837600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr5:35830800-35831200	Flanking Active TSS	Thymus	Thymus
17	chr5:35830800-35831600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:35830800-35831800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
19	chr5:35830800-35832000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
20	chr5:35830800-35833200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr5:35830800-35833400	Enhancers	Primary T cells from cord blood	blood

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