Variant report

Variant	rs6451224
Chromosome Location	chr5:35829691-35829692
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10057131	0.89[EUR][1000 genomes]
rs10058723	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10064778	1.00[ASN][1000 genomes]
rs10065462	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10078972	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10079517	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11567693	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11567757	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11739191	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11742782	0.95[EUR][1000 genomes]
rs11951270	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11953960	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11954524	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11958548	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2277042	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2277044	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4346794	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4361544	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4361545	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6860528	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6860903	1.00[ASN][1000 genomes]
rs6862072	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6873241	1.00[ASN][1000 genomes]
rs6875303	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6880287	1.00[ASN][1000 genomes]
rs6881747	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6889625	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6890572	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73090262	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73090263	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7700501	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7700688	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7703463	0.95[ASN][1000 genomes]
rs7730148	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35819000-35830200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr5:35819600-35835600	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr5:35822800-35830800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr5:35823000-35830600	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr5:35823600-35830800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr5:35824000-35831200	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr5:35824200-35830400	Enhancers	Primary T cells from cord blood	blood
8	chr5:35824400-35835800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr5:35826800-35831600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr5:35827000-35830600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr5:35827200-35830600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr5:35827400-35830600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr5:35828600-35830600	Weak transcription	Thymus	Thymus
14	chr5:35829000-35833200	Weak transcription	Osteobl	bone
15	chr5:35829200-35830600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr5:35829400-35829800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
17	chr5:35829400-35832000	Enhancers	Fetal Thymus	thymus
18	chr5:35829400-35832800	Enhancers	Primary T cells fromperipheralblood	blood

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