Variant report

Variant	rs11954524
Chromosome Location	chr5:35783810-35783811
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10058723	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10079269	0.89[ASN][1000 genomes]
rs10079517	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs11567693	1.00[CHB][hapmap]
rs11567757	1.00[CHB][hapmap]
rs11951270	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11953960	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11954459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11958548	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2277042	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2277044	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35908401	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4346794	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4361544	1.00[CHB][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4361545	1.00[CHB][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4634378	0.94[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs56016314	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56053392	0.81[ASN][1000 genomes]
rs56169453	0.89[ASN][1000 genomes]
rs56276485	0.89[ASN][1000 genomes]
rs56349002	0.93[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs57116204	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57681685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58390944	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58522285	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58846527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59217391	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs60501022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61180877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61373681	1.00[ASN][1000 genomes]
rs6451224	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6860528	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6861184	1.00[ASN][1000 genomes]
rs6862072	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6875303	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs6881747	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs73086237	0.84[ASN][1000 genomes]
rs73086251	0.89[ASN][1000 genomes]
rs73086255	0.89[ASN][1000 genomes]
rs73086261	0.89[ASN][1000 genomes]
rs73086281	0.89[ASN][1000 genomes]
rs73747933	0.89[ASN][1000 genomes]
rs73747964	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747965	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747966	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747969	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747970	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747971	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747973	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73747977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747980	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73747983	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7700501	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7700688	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7730148	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9292611	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35778000-35787800	Enhancers	Dnd41	blood
2	chr5:35778800-35784800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:35781000-35784600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr5:35781800-35788000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr5:35782000-35787800	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr5:35782200-35784400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:35782200-35784400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr5:35782200-35784600	Weak transcription	Fetal Thymus	thymus
9	chr5:35782200-35789000	Weak transcription	NHDF-Ad	bronchial
10	chr5:35782400-35784200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:35782400-35784400	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr5:35782400-35784800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr5:35782400-35786000	Weak transcription	Thymus	Thymus
14	chr5:35782400-35786400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr5:35782400-35786600	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr5:35782400-35786600	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr5:35782400-35788000	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr5:35782400-35788800	Weak transcription	NHLF	lung
19	chr5:35782600-35784800	Weak transcription	Osteobl	bone
20	chr5:35782600-35789800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr5:35782800-35787800	Enhancers	Primary T cells from cord blood	blood
22	chr5:35783000-35784800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr5:35783400-35784400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr5:35783400-35789600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr5:35783800-35784200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
26	chr5:35783800-35784200	Enhancers	HSMM	muscle

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