Variant report

Variant	rs57116204
Chromosome Location	chr5:35773252-35773253
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10058723	1.00[ASN][1000 genomes]
rs10079269	0.89[ASN][1000 genomes]
rs10079517	0.95[ASN][1000 genomes]
rs11951270	0.84[ASN][1000 genomes]
rs11953960	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11954459	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11954524	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11958548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2277042	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2277044	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35908401	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4346794	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4361544	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4361545	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4634378	0.95[ASN][1000 genomes]
rs56016314	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56053392	0.81[ASN][1000 genomes]
rs56169453	0.89[ASN][1000 genomes]
rs56276485	0.89[ASN][1000 genomes]
rs56349002	0.95[ASN][1000 genomes]
rs57681685	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58390944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58522285	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58846527	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59217391	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs60501022	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61180877	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61373681	1.00[ASN][1000 genomes]
rs6860528	0.95[ASN][1000 genomes]
rs6861184	1.00[ASN][1000 genomes]
rs6875303	0.95[ASN][1000 genomes]
rs6881747	0.84[ASN][1000 genomes]
rs73086237	0.84[ASN][1000 genomes]
rs73086251	0.89[ASN][1000 genomes]
rs73086255	0.89[ASN][1000 genomes]
rs73086261	0.89[ASN][1000 genomes]
rs73086281	0.89[ASN][1000 genomes]
rs73747933	0.89[ASN][1000 genomes]
rs73747964	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747971	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747973	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747974	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747976	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73747977	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747978	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747980	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73747983	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7700501	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7700688	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7730148	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9292611	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35771000-35781800	Weak transcription	Brain Anterior Caudate	brain
2	chr5:35772000-35774000	Weak transcription	HMEC	breast
3	chr5:35772200-35773800	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr5:35772200-35774000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:35772200-35774000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:35772200-35777000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr5:35772200-35777400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:35772400-35773800	Weak transcription	NHDF-Ad	bronchial
9	chr5:35772400-35775400	Enhancers	Hela-S3	cervix
10	chr5:35772400-35777000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:35772400-35780600	Weak transcription	HSMM	muscle
12	chr5:35772600-35773800	Weak transcription	NHLF	lung
13	chr5:35772800-35773800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:35772800-35773800	Weak transcription	Primary T cells from cord blood	blood
15	chr5:35772800-35773800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr5:35772800-35773800	Weak transcription	Osteobl	bone
17	chr5:35772800-35778000	Weak transcription	Fetal Thymus	thymus
18	chr5:35772800-35778000	Weak transcription	Thymus	Thymus
19	chr5:35773000-35773400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr5:35773200-35773600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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