Variant report

Variant	rs56276485
Chromosome Location	chr5:35761226-35761227
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 138 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs10041865	1.00[EUR][1000 genomes]
rs10058723	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10077553	1.00[EUR][1000 genomes]
rs10079269	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10079517	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10491432	1.00[EUR][1000 genomes]
rs10491433	1.00[EUR][1000 genomes]
rs11567717	1.00[EUR][1000 genomes]
rs11567730	1.00[EUR][1000 genomes]
rs11567764	1.00[EUR][1000 genomes]
rs11951270	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11953960	0.85[ASN][1000 genomes]
rs11954459	0.89[ASN][1000 genomes]
rs11954524	0.89[ASN][1000 genomes]
rs11958548	1.00[ASN][1000 genomes]
rs1494570	1.00[EUR][1000 genomes]
rs16902367	1.00[EUR][1000 genomes]
rs16902514	1.00[EUR][1000 genomes]
rs16902535	1.00[EUR][1000 genomes]
rs16902557	1.00[EUR][1000 genomes]
rs16902562	1.00[EUR][1000 genomes]
rs16902592	1.00[EUR][1000 genomes]
rs16902593	1.00[EUR][1000 genomes]
rs16902594	1.00[EUR][1000 genomes]
rs16902638	1.00[EUR][1000 genomes]
rs16902639	1.00[EUR][1000 genomes]
rs16902643	1.00[EUR][1000 genomes]
rs2277042	0.85[ASN][1000 genomes]
rs2277044	0.89[ASN][1000 genomes]
rs28756345	1.00[EUR][1000 genomes]
rs35908401	0.85[ASN][1000 genomes]
rs4346794	0.85[ASN][1000 genomes]
rs4361544	0.85[ASN][1000 genomes]
rs4361545	0.85[ASN][1000 genomes]
rs4634378	0.85[ASN][1000 genomes]
rs55662701	1.00[EUR][1000 genomes]
rs55696459	1.00[EUR][1000 genomes]
rs56016314	0.85[ASN][1000 genomes]
rs56053392	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56169453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56297110	1.00[EUR][1000 genomes]
rs56349002	0.85[ASN][1000 genomes]
rs56773364	1.00[EUR][1000 genomes]
rs57116204	0.89[ASN][1000 genomes]
rs57435143	1.00[EUR][1000 genomes]
rs57498894	1.00[EUR][1000 genomes]
rs57681685	0.89[ASN][1000 genomes]
rs58390944	1.00[ASN][1000 genomes]
rs58522285	0.89[ASN][1000 genomes]
rs58541693	1.00[EUR][1000 genomes]
rs58671818	1.00[EUR][1000 genomes]
rs58846527	0.89[ASN][1000 genomes]
rs58872016	1.00[EUR][1000 genomes]
rs59217391	0.85[ASN][1000 genomes]
rs59555387	1.00[EUR][1000 genomes]
rs59714026	1.00[EUR][1000 genomes]
rs60501022	0.89[ASN][1000 genomes]
rs61180877	0.89[ASN][1000 genomes]
rs61373681	0.89[ASN][1000 genomes]
rs6451222	1.00[EUR][1000 genomes]
rs6860528	0.85[ASN][1000 genomes]
rs6861184	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6864736	1.00[EUR][1000 genomes]
rs6875303	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6876261	1.00[EUR][1000 genomes]
rs6881747	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6881919	1.00[EUR][1000 genomes]
rs6894309	1.00[EUR][1000 genomes]
rs73080218	1.00[EUR][1000 genomes]
rs73080241	1.00[EUR][1000 genomes]
rs73080293	1.00[EUR][1000 genomes]
rs73082265	1.00[EUR][1000 genomes]
rs73082277	1.00[EUR][1000 genomes]
rs73084351	1.00[EUR][1000 genomes]
rs73084388	1.00[EUR][1000 genomes]
rs73084398	1.00[EUR][1000 genomes]
rs73086208	1.00[EUR][1000 genomes]
rs73086212	1.00[EUR][1000 genomes]
rs73086213	1.00[EUR][1000 genomes]
rs73086237	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73086243	1.00[EUR][1000 genomes]
rs73086251	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73086261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086281	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086282	1.00[EUR][1000 genomes]
rs73086302	1.00[EUR][1000 genomes]
rs73088209	1.00[EUR][1000 genomes]
rs73088244	1.00[EUR][1000 genomes]
rs73090209	1.00[EUR][1000 genomes]
rs73090222	1.00[EUR][1000 genomes]
rs73090239	1.00[EUR][1000 genomes]
rs73090241	1.00[EUR][1000 genomes]
rs73090248	1.00[EUR][1000 genomes]
rs73090257	1.00[EUR][1000 genomes]
rs73090276	1.00[EUR][1000 genomes]
rs73090284	1.00[EUR][1000 genomes]
rs73090289	1.00[EUR][1000 genomes]
rs73090291	1.00[EUR][1000 genomes]
rs73090295	1.00[EUR][1000 genomes]
rs73090298	1.00[EUR][1000 genomes]
rs73092011	1.00[EUR][1000 genomes]
rs73092033	1.00[EUR][1000 genomes]
rs73092034	1.00[EUR][1000 genomes]
rs73092092	1.00[EUR][1000 genomes]
rs73092100	1.00[EUR][1000 genomes]
rs73094009	1.00[EUR][1000 genomes]
rs73094019	1.00[EUR][1000 genomes]
rs73094022	1.00[EUR][1000 genomes]
rs73747933	1.00[ASN][1000 genomes]
rs73747964	0.89[ASN][1000 genomes]
rs73747965	0.89[ASN][1000 genomes]
rs73747966	0.89[ASN][1000 genomes]
rs73747969	0.89[ASN][1000 genomes]
rs73747970	0.89[ASN][1000 genomes]
rs73747971	0.89[ASN][1000 genomes]
rs73747973	0.89[ASN][1000 genomes]
rs73747974	0.89[ASN][1000 genomes]
rs73747977	0.89[ASN][1000 genomes]
rs73747978	0.89[ASN][1000 genomes]
rs73747980	0.85[ASN][1000 genomes]
rs73747983	0.85[ASN][1000 genomes]
rs73750806	1.00[EUR][1000 genomes]
rs73750816	1.00[EUR][1000 genomes]
rs73750817	1.00[EUR][1000 genomes]
rs7700501	0.89[ASN][1000 genomes]
rs7700688	0.89[ASN][1000 genomes]
rs7701519	1.00[EUR][1000 genomes]
rs7704710	1.00[EUR][1000 genomes]
rs7708334	1.00[EUR][1000 genomes]
rs7710405	1.00[EUR][1000 genomes]
rs7714297	1.00[EUR][1000 genomes]
rs7720394	1.00[EUR][1000 genomes]
rs7724777	1.00[EUR][1000 genomes]
rs7730148	0.85[ASN][1000 genomes]
rs9292610	1.00[EUR][1000 genomes]
rs9292611	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35758800-35761400	Weak transcription	Primary T cells from cord blood	blood
2	chr5:35758800-35761600	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr5:35760600-35761800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr5:35761200-35761800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr5:35761200-35761800	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr5:35761200-35761800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr5:35761200-35762000	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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