Variant report

Variant	rs73747964
Chromosome Location	chr5:35770859-35770860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GTF2F1	chr5:35770848-35772040	Hela-S3	cervix:	n/a	n/a
2	CEBPB	chr5:35770772-35773113	Hela-S3	cervix:	n/a	chr5:35772052-35772064 chr5:35771698-35771707 chr5:35771698-35771707 chr5:35772945-35772956 chr5:35771698-35771707 chr5:35771696-35771709

Variant related genes	Relation type
SPEF2	TF binding region

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10058723	1.00[ASN][1000 genomes]
rs10079269	0.89[ASN][1000 genomes]
rs10079517	0.95[ASN][1000 genomes]
rs11951270	0.84[ASN][1000 genomes]
rs11953960	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11954459	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11954524	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11958548	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2277042	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2277044	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35908401	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4346794	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4361544	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4361545	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4634378	0.95[ASN][1000 genomes]
rs56016314	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56053392	0.81[ASN][1000 genomes]
rs56169453	0.89[ASN][1000 genomes]
rs56276485	0.89[ASN][1000 genomes]
rs56349002	0.95[ASN][1000 genomes]
rs57116204	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57681685	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58390944	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58522285	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58846527	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59217391	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs60501022	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61180877	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61373681	1.00[ASN][1000 genomes]
rs6860528	0.95[ASN][1000 genomes]
rs6861184	1.00[ASN][1000 genomes]
rs6875303	0.95[ASN][1000 genomes]
rs6881747	0.84[ASN][1000 genomes]
rs73086237	0.84[ASN][1000 genomes]
rs73086251	0.89[ASN][1000 genomes]
rs73086255	0.89[ASN][1000 genomes]
rs73086261	0.89[ASN][1000 genomes]
rs73086281	0.89[ASN][1000 genomes]
rs73747933	0.89[ASN][1000 genomes]
rs73747965	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747966	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747969	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747970	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747973	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747974	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747976	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73747977	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747978	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747980	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73747983	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7700501	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7700688	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7730148	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9292611	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35769400-35772000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:35770000-35772800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:35770600-35771200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:35770600-35771200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr5:35770600-35771400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr5:35770600-35771400	Enhancers	Osteobl	bone
7	chr5:35770600-35772400	Enhancers	HSMM	muscle
8	chr5:35770600-35772400	Enhancers	NHDF-Ad	bronchial
9	chr5:35770600-35773000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:35770800-35771600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:35770800-35772000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:35770800-35772200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:35770800-35772400	Flanking Active TSS	Hela-S3	cervix
14	chr5:35770800-35772600	Enhancers	NHLF	lung

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