Variant report

Variant	rs73747976
Chromosome Location	chr5:35781235-35781236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10058723	0.82[ASN][1000 genomes]
rs11953960	1.00[AMR][1000 genomes]
rs11954459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11954524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11958548	1.00[AMR][1000 genomes]
rs2277042	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2277044	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35908401	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4346794	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4361544	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4361545	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4634378	0.94[AFR][1000 genomes]
rs56016314	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56349002	0.93[AFR][1000 genomes]
rs57116204	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs57681685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs58390944	1.00[AMR][1000 genomes]
rs58522285	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs58846527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs59217391	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60501022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61180877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61373681	0.82[ASN][1000 genomes]
rs6860528	0.94[AFR][1000 genomes]
rs6861184	0.82[ASN][1000 genomes]
rs73747964	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73747965	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73747966	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73747969	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73747970	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73747971	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73747973	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73747974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73747977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73747978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73747980	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73747983	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7700501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7700688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7730148	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9292611	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35771000-35781800	Weak transcription	Brain Anterior Caudate	brain
2	chr5:35778000-35782200	Enhancers	Fetal Thymus	thymus
3	chr5:35778000-35787800	Enhancers	Dnd41	blood
4	chr5:35778200-35781400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:35778800-35784800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:35779400-35782200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
7	chr5:35779400-35782800	Flanking Active TSS	Primary T cells from cord blood	blood
8	chr5:35780000-35782200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr5:35780200-35781400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:35780600-35782200	Enhancers	Primary hematopoietic stem cells	blood
11	chr5:35780600-35782200	Enhancers	HSMM	muscle
12	chr5:35780600-35782600	Enhancers	Osteobl	bone
13	chr5:35780600-35783400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr5:35780800-35781400	Active TSS	Primary T cells fromperipheralblood	blood
15	chr5:35780800-35781400	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr5:35780800-35781400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr5:35780800-35781400	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr5:35780800-35782200	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr5:35780800-35782200	Enhancers	NHDF-Ad	bronchial
20	chr5:35780800-35782400	Enhancers	HUVEC	blood vessel
21	chr5:35781000-35781400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr5:35781000-35781400	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr5:35781000-35781400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr5:35781000-35781400	Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr5:35781000-35781400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr5:35781000-35781400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr5:35781000-35781800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr5:35781000-35782400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr5:35781000-35784600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr5:35781200-35781600	Enhancers	NHLF	lung
31	chr5:35781200-35781800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr5:35781200-35782000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr5:35781200-35782400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr5:35781200-35782400	Enhancers	Thymus	Thymus

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