Variant report

Variant	rs10058723
Chromosome Location	chr5:35771022-35771023
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GTF2F1	chr5:35770848-35772040	Hela-S3	cervix:	n/a	n/a
2	CEBPB	chr5:35770772-35773113	Hela-S3	cervix:	n/a	chr5:35772052-35772064 chr5:35771698-35771707 chr5:35771698-35771707 chr5:35772945-35772956 chr5:35771698-35771707 chr5:35771696-35771709

Variant related genes	Relation type
SPEF2	TF binding region

Extended variants
information (count: 148 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:147)

rs_ID	r²[population]
rs10041865	1.00[EUR][1000 genomes]
rs10077553	1.00[EUR][1000 genomes]
rs10079269	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10079517	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10491432	1.00[EUR][1000 genomes]
rs10491433	1.00[EUR][1000 genomes]
rs11567693	1.00[CHB][hapmap]
rs11567717	1.00[EUR][1000 genomes]
rs11567730	1.00[EUR][1000 genomes]
rs11567757	1.00[CHB][hapmap]
rs11567764	1.00[EUR][1000 genomes]
rs11951270	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11953960	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs11954459	1.00[ASN][1000 genomes]
rs11954524	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11958548	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1374015	1.00[EUR][1000 genomes]
rs1494570	1.00[EUR][1000 genomes]
rs16902367	1.00[EUR][1000 genomes]
rs16902514	1.00[EUR][1000 genomes]
rs16902535	1.00[EUR][1000 genomes]
rs16902557	1.00[EUR][1000 genomes]
rs16902562	1.00[EUR][1000 genomes]
rs16902592	1.00[EUR][1000 genomes]
rs16902593	1.00[EUR][1000 genomes]
rs16902594	1.00[EUR][1000 genomes]
rs16902638	1.00[EUR][1000 genomes]
rs16902639	1.00[EUR][1000 genomes]
rs16902643	1.00[EUR][1000 genomes]
rs16902650	1.00[EUR][1000 genomes]
rs16902651	1.00[EUR][1000 genomes]
rs2277042	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2277044	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28756345	1.00[EUR][1000 genomes]
rs35908401	0.95[ASN][1000 genomes]
rs4346794	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4361544	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs4361545	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs4634378	0.95[ASN][1000 genomes]
rs55662701	1.00[EUR][1000 genomes]
rs55696459	1.00[EUR][1000 genomes]
rs56016314	0.95[ASN][1000 genomes]
rs56053392	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56169453	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56276485	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56297110	1.00[EUR][1000 genomes]
rs56349002	0.95[ASN][1000 genomes]
rs56773364	1.00[EUR][1000 genomes]
rs57116204	1.00[ASN][1000 genomes]
rs57435143	1.00[EUR][1000 genomes]
rs57498894	1.00[EUR][1000 genomes]
rs57681685	1.00[ASN][1000 genomes]
rs58390944	0.89[ASN][1000 genomes]
rs58522285	1.00[ASN][1000 genomes]
rs58541693	1.00[EUR][1000 genomes]
rs58671818	1.00[EUR][1000 genomes]
rs58846527	1.00[ASN][1000 genomes]
rs58872016	1.00[EUR][1000 genomes]
rs59217391	0.95[ASN][1000 genomes]
rs59555387	1.00[EUR][1000 genomes]
rs59714026	1.00[EUR][1000 genomes]
rs60501022	1.00[ASN][1000 genomes]
rs61180877	1.00[ASN][1000 genomes]
rs61373681	1.00[ASN][1000 genomes]
rs6451222	1.00[EUR][1000 genomes]
rs6451224	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6860528	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6861184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6862072	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6864736	1.00[EUR][1000 genomes]
rs6875303	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6876261	1.00[EUR][1000 genomes]
rs6881747	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6881919	1.00[EUR][1000 genomes]
rs6894309	1.00[EUR][1000 genomes]
rs73076116	1.00[EUR][1000 genomes]
rs73076118	1.00[EUR][1000 genomes]
rs73080218	1.00[EUR][1000 genomes]
rs73080241	1.00[EUR][1000 genomes]
rs73080293	1.00[EUR][1000 genomes]
rs73082265	1.00[EUR][1000 genomes]
rs73082277	1.00[EUR][1000 genomes]
rs73084351	1.00[EUR][1000 genomes]
rs73084388	1.00[EUR][1000 genomes]
rs73084398	1.00[EUR][1000 genomes]
rs73086208	1.00[EUR][1000 genomes]
rs73086212	1.00[EUR][1000 genomes]
rs73086213	1.00[EUR][1000 genomes]
rs73086237	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73086243	1.00[EUR][1000 genomes]
rs73086251	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73086255	0.89[ASN][1000 genomes]
rs73086261	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73086281	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73086282	1.00[EUR][1000 genomes]
rs73086302	1.00[EUR][1000 genomes]
rs73088209	1.00[EUR][1000 genomes]
rs73088244	1.00[EUR][1000 genomes]
rs73090209	1.00[EUR][1000 genomes]
rs73090222	1.00[EUR][1000 genomes]
rs73090239	1.00[EUR][1000 genomes]
rs73090241	1.00[EUR][1000 genomes]
rs73090248	1.00[EUR][1000 genomes]
rs73090257	1.00[EUR][1000 genomes]
rs73090276	1.00[EUR][1000 genomes]
rs73090284	1.00[EUR][1000 genomes]
rs73090289	1.00[EUR][1000 genomes]
rs73090291	1.00[EUR][1000 genomes]
rs73090295	1.00[EUR][1000 genomes]
rs73090298	1.00[EUR][1000 genomes]
rs73092011	1.00[EUR][1000 genomes]
rs73092033	1.00[EUR][1000 genomes]
rs73092034	1.00[EUR][1000 genomes]
rs73092092	1.00[EUR][1000 genomes]
rs73092100	1.00[EUR][1000 genomes]
rs73094009	1.00[EUR][1000 genomes]
rs73094019	1.00[EUR][1000 genomes]
rs73094022	1.00[EUR][1000 genomes]
rs73747933	0.89[ASN][1000 genomes]
rs73747964	1.00[ASN][1000 genomes]
rs73747965	1.00[ASN][1000 genomes]
rs73747966	1.00[ASN][1000 genomes]
rs73747969	1.00[ASN][1000 genomes]
rs73747970	1.00[ASN][1000 genomes]
rs73747971	1.00[ASN][1000 genomes]
rs73747973	1.00[ASN][1000 genomes]
rs73747974	1.00[ASN][1000 genomes]
rs73747976	0.82[ASN][1000 genomes]
rs73747977	1.00[ASN][1000 genomes]
rs73747978	1.00[ASN][1000 genomes]
rs73747980	0.95[ASN][1000 genomes]
rs73747983	0.95[ASN][1000 genomes]
rs73750806	1.00[EUR][1000 genomes]
rs73750816	1.00[EUR][1000 genomes]
rs73750817	1.00[EUR][1000 genomes]
rs7700501	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7700688	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7701519	1.00[EUR][1000 genomes]
rs7704710	1.00[EUR][1000 genomes]
rs7708334	1.00[EUR][1000 genomes]
rs7710405	1.00[EUR][1000 genomes]
rs7714297	1.00[EUR][1000 genomes]
rs7720394	1.00[EUR][1000 genomes]
rs7724777	1.00[EUR][1000 genomes]
rs7730148	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9292610	1.00[EUR][1000 genomes]
rs9292611	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35769400-35772000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:35770000-35772800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:35770600-35771200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:35770600-35771200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr5:35770600-35771400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr5:35770600-35771400	Enhancers	Osteobl	bone
7	chr5:35770600-35772400	Enhancers	HSMM	muscle
8	chr5:35770600-35772400	Enhancers	NHDF-Ad	bronchial
9	chr5:35770600-35773000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:35770800-35771600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:35770800-35772000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:35770800-35772200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:35770800-35772400	Flanking Active TSS	Hela-S3	cervix
14	chr5:35770800-35772600	Enhancers	NHLF	lung
15	chr5:35771000-35772200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr5:35771000-35772400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr5:35771000-35781800	Weak transcription	Brain Anterior Caudate	brain

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