Variant report
Variant | rs73094019 |
---|---|
Chromosome Location | chr5:35905396-35905397 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
1
No data |
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rs_ID | r2[population] |
---|---|
rs10041865 | 1.00[EUR][1000 genomes] |
rs10058723 | 1.00[EUR][1000 genomes] |
rs10058960 | 1.00[EUR][1000 genomes] |
rs10077553 | 1.00[EUR][1000 genomes] |
rs10079269 | 1.00[EUR][1000 genomes] |
rs10079517 | 1.00[EUR][1000 genomes] |
rs10491432 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10491433 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11567717 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11567730 | 1.00[EUR][1000 genomes] |
rs11567764 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11951270 | 1.00[EUR][1000 genomes] |
rs1374015 | 1.00[EUR][1000 genomes] |
rs1494570 | 1.00[EUR][1000 genomes] |
rs16902514 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs16902535 | 1.00[EUR][1000 genomes] |
rs16902557 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs16902562 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs16902592 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs16902593 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs16902594 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs16902638 | 1.00[EUR][1000 genomes] |
rs16902639 | 1.00[EUR][1000 genomes] |
rs16902643 | 1.00[EUR][1000 genomes] |
rs16902650 | 1.00[EUR][1000 genomes] |
rs16902651 | 1.00[EUR][1000 genomes] |
rs16902667 | 1.00[EUR][1000 genomes] |
rs16902670 | 1.00[EUR][1000 genomes] |
rs16902682 | 1.00[EUR][1000 genomes] |
rs28756345 | 1.00[EUR][1000 genomes] |
rs55662701 | 1.00[EUR][1000 genomes] |
rs56053392 | 1.00[EUR][1000 genomes] |
rs56169453 | 1.00[EUR][1000 genomes] |
rs56276485 | 1.00[EUR][1000 genomes] |
rs56665523 | 1.00[EUR][1000 genomes] |
rs56773364 | 1.00[EUR][1000 genomes] |
rs57273729 | 1.00[EUR][1000 genomes] |
rs57498894 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs57579833 | 1.00[EUR][1000 genomes] |
rs58168401 | 1.00[EUR][1000 genomes] |
rs58457055 | 1.00[EUR][1000 genomes] |
rs58671818 | 1.00[EUR][1000 genomes] |
rs58872016 | 1.00[EUR][1000 genomes] |
rs59555387 | 1.00[EUR][1000 genomes] |
rs59714026 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6451222 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6861184 | 1.00[EUR][1000 genomes] |
rs6864736 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6875303 | 1.00[EUR][1000 genomes] |
rs6876261 | 1.00[EUR][1000 genomes] |
rs6881747 | 1.00[EUR][1000 genomes] |
rs6881919 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6894309 | 1.00[EUR][1000 genomes] |
rs73076116 | 1.00[EUR][1000 genomes] |
rs73076118 | 1.00[EUR][1000 genomes] |
rs73076126 | 1.00[EUR][1000 genomes] |
rs73076137 | 1.00[EUR][1000 genomes] |
rs73076149 | 1.00[EUR][1000 genomes] |
rs73076151 | 1.00[EUR][1000 genomes] |
rs73076155 | 1.00[EUR][1000 genomes] |
rs73076161 | 1.00[EUR][1000 genomes] |
rs73076166 | 1.00[EUR][1000 genomes] |
rs73076168 | 1.00[EUR][1000 genomes] |
rs73076171 | 1.00[EUR][1000 genomes] |
rs73076172 | 1.00[EUR][1000 genomes] |
rs73076173 | 1.00[EUR][1000 genomes] |
rs73076178 | 1.00[EUR][1000 genomes] |
rs73076180 | 1.00[EUR][1000 genomes] |
rs73076197 | 1.00[EUR][1000 genomes] |
rs73076199 | 1.00[EUR][1000 genomes] |
rs73078005 | 1.00[EUR][1000 genomes] |
rs73078010 | 1.00[EUR][1000 genomes] |
rs73078011 | 1.00[EUR][1000 genomes] |
rs73078024 | 1.00[EUR][1000 genomes] |
rs73084388 | 1.00[EUR][1000 genomes] |
rs73084398 | 1.00[EUR][1000 genomes] |
rs73086208 | 1.00[EUR][1000 genomes] |
rs73086212 | 1.00[EUR][1000 genomes] |
rs73086213 | 1.00[EUR][1000 genomes] |
rs73086237 | 1.00[EUR][1000 genomes] |
rs73086243 | 1.00[EUR][1000 genomes] |
rs73086251 | 1.00[EUR][1000 genomes] |
rs73086261 | 1.00[EUR][1000 genomes] |
rs73086281 | 1.00[EUR][1000 genomes] |
rs73086282 | 1.00[EUR][1000 genomes] |
rs73086302 | 1.00[EUR][1000 genomes] |
rs73088209 | 1.00[EUR][1000 genomes] |
rs73088244 | 1.00[EUR][1000 genomes] |
rs73090209 | 1.00[EUR][1000 genomes] |
rs73090222 | 1.00[EUR][1000 genomes] |
rs73090239 | 1.00[EUR][1000 genomes] |
rs73090241 | 1.00[EUR][1000 genomes] |
rs73090248 | 1.00[EUR][1000 genomes] |
rs73090257 | 1.00[EUR][1000 genomes] |
rs73090276 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73090284 | 1.00[EUR][1000 genomes] |
rs73090289 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73090291 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73090295 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73090298 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73092011 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73092033 | 1.00[EUR][1000 genomes] |
rs73092034 | 1.00[EUR][1000 genomes] |
rs73092092 | 1.00[EUR][1000 genomes] |
rs73092100 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73094009 | 1.00[EUR][1000 genomes] |
rs73094022 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7701519 | 1.00[EUR][1000 genomes] |
rs7704710 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7708334 | 1.00[EUR][1000 genomes] |
rs7710405 | 1.00[EUR][1000 genomes] |
rs7714297 | 1.00[EUR][1000 genomes] |
rs7720394 | 1.00[EUR][1000 genomes] |
rs7724777 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs852244 | 0.83[AFR][1000 genomes] |
rs852246 | 0.83[AFR][1000 genomes] |
rs852251 | 0.83[AFR][1000 genomes] |
rs852252 | 0.83[AFR][1000 genomes] |
rs860414 | 0.83[AFR][1000 genomes] |
rs863781 | 0.83[AFR][1000 genomes] |
rs9292610 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv471011 | chr5:35861068-36003217 | Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | nsv830261 | chr5:35863084-36018048 | Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv1025695 | chr5:35902486-36036934 | Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:35899000-35906000 | Enhancers | Primary T helper cells PMA-I stimulated | -- |
2 | chr5:35899000-35909200 | Enhancers | Fetal Thymus | thymus |
3 | chr5:35899200-35905400 | Enhancers | Primary T helper 17 cells PMA-I stimulated | -- |
4 | chr5:35901000-35905400 | Enhancers | Primary T regulatory cells fromperipheralblood | blood |
5 | chr5:35904600-35905400 | Enhancers | Primary T helper cells fromperipheralblood | blood |
6 | chr5:35904600-35905400 | Flanking Active TSS | GM12878-XiMat | blood |
7 | chr5:35904600-35905600 | Enhancers | Primary T killer memory cells from peripheral blood | blood |
8 | chr5:35904800-35906200 | Enhancers | Thymus | Thymus |
9 | chr5:35905000-35908200 | Weak transcription | Primary T killer naive cells fromperipheralblood | blood |
10 | chr5:35905000-35908400 | Weak transcription | Primary T helper naive cells from peripheral blood | blood |
11 | chr5:35905200-35908800 | Enhancers | Dnd41 | blood |