Variant report

Variant	rs56053392
Chromosome Location	chr5:35764835-35764836
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs10041865	1.00[EUR][1000 genomes]
rs10058723	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10077553	1.00[EUR][1000 genomes]
rs10079269	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10079517	1.00[EUR][1000 genomes]
rs10491432	1.00[EUR][1000 genomes]
rs10491433	1.00[EUR][1000 genomes]
rs11567717	1.00[EUR][1000 genomes]
rs11567730	1.00[EUR][1000 genomes]
rs11567764	1.00[EUR][1000 genomes]
rs11951270	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11954459	0.81[ASN][1000 genomes]
rs11954524	0.81[ASN][1000 genomes]
rs11958548	0.90[ASN][1000 genomes]
rs1374015	1.00[EUR][1000 genomes]
rs1494570	1.00[EUR][1000 genomes]
rs16902367	1.00[EUR][1000 genomes]
rs16902514	1.00[EUR][1000 genomes]
rs16902535	1.00[EUR][1000 genomes]
rs16902557	1.00[EUR][1000 genomes]
rs16902562	1.00[EUR][1000 genomes]
rs16902592	1.00[EUR][1000 genomes]
rs16902593	1.00[EUR][1000 genomes]
rs16902594	1.00[EUR][1000 genomes]
rs16902638	1.00[EUR][1000 genomes]
rs16902639	1.00[EUR][1000 genomes]
rs16902643	1.00[EUR][1000 genomes]
rs2277044	0.81[ASN][1000 genomes]
rs28756345	1.00[EUR][1000 genomes]
rs55662701	1.00[EUR][1000 genomes]
rs55696459	1.00[EUR][1000 genomes]
rs56169453	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56276485	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56297110	1.00[EUR][1000 genomes]
rs56773364	1.00[EUR][1000 genomes]
rs57116204	0.81[ASN][1000 genomes]
rs57435143	1.00[EUR][1000 genomes]
rs57498894	1.00[EUR][1000 genomes]
rs57681685	0.81[ASN][1000 genomes]
rs58390944	0.90[ASN][1000 genomes]
rs58522285	0.81[ASN][1000 genomes]
rs58541693	1.00[EUR][1000 genomes]
rs58671818	1.00[EUR][1000 genomes]
rs58846527	0.81[ASN][1000 genomes]
rs58872016	1.00[EUR][1000 genomes]
rs59555387	1.00[EUR][1000 genomes]
rs59714026	1.00[EUR][1000 genomes]
rs60501022	0.81[ASN][1000 genomes]
rs61180877	0.81[ASN][1000 genomes]
rs61373681	0.81[ASN][1000 genomes]
rs6451222	1.00[EUR][1000 genomes]
rs6861184	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6864736	1.00[EUR][1000 genomes]
rs6875303	1.00[EUR][1000 genomes]
rs6876261	1.00[EUR][1000 genomes]
rs6881747	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6881919	1.00[EUR][1000 genomes]
rs6894309	1.00[EUR][1000 genomes]
rs73076116	1.00[EUR][1000 genomes]
rs73080218	1.00[EUR][1000 genomes]
rs73080241	1.00[EUR][1000 genomes]
rs73080293	1.00[EUR][1000 genomes]
rs73082265	1.00[EUR][1000 genomes]
rs73082277	1.00[EUR][1000 genomes]
rs73084351	1.00[EUR][1000 genomes]
rs73084388	1.00[EUR][1000 genomes]
rs73084398	1.00[EUR][1000 genomes]
rs73086208	1.00[EUR][1000 genomes]
rs73086212	1.00[EUR][1000 genomes]
rs73086213	1.00[EUR][1000 genomes]
rs73086237	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73086243	1.00[EUR][1000 genomes]
rs73086251	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73086255	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73086261	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73086281	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73086282	1.00[EUR][1000 genomes]
rs73086302	1.00[EUR][1000 genomes]
rs73088209	1.00[EUR][1000 genomes]
rs73088244	1.00[EUR][1000 genomes]
rs73090209	1.00[EUR][1000 genomes]
rs73090222	1.00[EUR][1000 genomes]
rs73090239	1.00[EUR][1000 genomes]
rs73090241	1.00[EUR][1000 genomes]
rs73090248	1.00[EUR][1000 genomes]
rs73090257	1.00[EUR][1000 genomes]
rs73090276	1.00[EUR][1000 genomes]
rs73090284	1.00[EUR][1000 genomes]
rs73090289	1.00[EUR][1000 genomes]
rs73090291	1.00[EUR][1000 genomes]
rs73090295	1.00[EUR][1000 genomes]
rs73090298	1.00[EUR][1000 genomes]
rs73092011	1.00[EUR][1000 genomes]
rs73092033	1.00[EUR][1000 genomes]
rs73092034	1.00[EUR][1000 genomes]
rs73092092	1.00[EUR][1000 genomes]
rs73092100	1.00[EUR][1000 genomes]
rs73094009	1.00[EUR][1000 genomes]
rs73094019	1.00[EUR][1000 genomes]
rs73094022	1.00[EUR][1000 genomes]
rs73747933	0.90[ASN][1000 genomes]
rs73747964	0.81[ASN][1000 genomes]
rs73747965	0.81[ASN][1000 genomes]
rs73747966	0.81[ASN][1000 genomes]
rs73747969	0.81[ASN][1000 genomes]
rs73747970	0.81[ASN][1000 genomes]
rs73747971	0.81[ASN][1000 genomes]
rs73747973	0.81[ASN][1000 genomes]
rs73747974	0.81[ASN][1000 genomes]
rs73747977	0.81[ASN][1000 genomes]
rs73747978	0.81[ASN][1000 genomes]
rs73750806	1.00[EUR][1000 genomes]
rs73750816	1.00[EUR][1000 genomes]
rs73750817	1.00[EUR][1000 genomes]
rs7700501	0.81[ASN][1000 genomes]
rs7700688	0.81[ASN][1000 genomes]
rs7701519	1.00[EUR][1000 genomes]
rs7704710	1.00[EUR][1000 genomes]
rs7708334	1.00[EUR][1000 genomes]
rs7710405	1.00[EUR][1000 genomes]
rs7714297	1.00[EUR][1000 genomes]
rs7720394	1.00[EUR][1000 genomes]
rs7724777	1.00[EUR][1000 genomes]
rs9292610	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35763000-35766200	Weak transcription	Osteobl	bone
2	chr5:35764800-35767000	Enhancers	Hela-S3	cervix

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