The 2.0 version of rSNPBase

Variant report

Variant rs16902514
Chromosome Location chr5:35877759-35877760
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:35860400-35883800 Weak transcription Small Intestine intestine
2 chr5:35866200-35878400 Genic enhancers Primary T killer naive cells fromperipheralblood blood
3 chr5:35866600-35878800 Genic enhancers Primary T helper naive cells from peripheral blood blood
4 chr5:35866600-35882000 Genic enhancers Dnd41 blood
5 chr5:35867600-35878000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
6 chr5:35867800-35879800 Genic enhancers Primary T helper naive cells fromperipheralblood blood
7 chr5:35870600-35878200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
8 chr5:35873200-35880200 Genic enhancers Primary T cells from cord blood blood
9 chr5:35873200-35880200 Genic enhancers Thymus Thymus
10 chr5:35873400-35880000 Genic enhancers Primary T helper cells fromperipheralblood blood
11 chr5:35873600-35878000 Genic enhancers Primary T cells fromperipheralblood blood
12 chr5:35874400-35878400 Genic enhancers Primary T helper memory cells from peripheral blood 2 blood
13 chr5:35875400-35878000 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
14 chr5:35875400-35878200 Strong transcription HSMM muscle
15 chr5:35875400-35883200 Genic enhancers Fetal Thymus thymus
16 chr5:35875600-35877800 Genic enhancers Primary T helper 17 cells PMA-I stimulated --
17 chr5:35876200-35878000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
18 chr5:35876200-35878000 Enhancers NHDF-Ad bronchial
19 chr5:35876400-35877800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr5:35876400-35878200 Genic enhancers Primary T helper memory cells from peripheral blood 1 blood
21 chr5:35876400-35878200 Transcr. at gene 5' and 3' Primary T helper cells PMA-I stimulated --
22 chr5:35876600-35878000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
23 chr5:35876600-35884600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
24 chr5:35876800-35877800 Flanking Active TSS Hela-S3 cervix
25 chr5:35876800-35877800 Weak transcription NH-A brain
26 chr5:35876800-35883600 Weak transcription Osteobl bone
27 chr5:35877000-35878000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
28 chr5:35877000-35879200 Weak transcription Primary hematopoietic stem cells blood
29 chr5:35877000-35879200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
30 chr5:35877000-35879200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
31 chr5:35877000-35880400 Strong transcription Primary T regulatory cells fromperipheralblood blood
32 chr5:35877200-35878400 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
33 chr5:35877200-35879200 Weak transcription Primary hematopoietic stem cells short term culture blood
34 chr5:35877400-35878400 Enhancers GM12878-XiMat blood
35 chr5:35877400-35879800 Strong transcription NHLF lung
36 chr5:35877400-35883600 Weak transcription Muscle Satellite Cultured Cells --
37 chr5:35877600-35877800 Flanking Active TSS Duodenum Mucosa Duodenum
38 chr5:35877600-35877800 Enhancers Lung lung
39 chr5:35877600-35878000 Genic enhancers Primary T killer memory cells from peripheral blood blood
40 chr5:35877600-35883200 Weak transcription NHEK skin

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Last update: Aug 31, 2015