Variant report

Variant	rs6876261
Chromosome Location	chr5:35777334-35777335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr5:35777280-35777430	SAEC	small airway:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35775517..35778648-chr5:35922425..35925646,3	MCF-7	breast:

Variant related genes	Relation type
SPEF2	TF binding region

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10041865	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10058723	1.00[EUR][1000 genomes]
rs10077553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10079269	1.00[EUR][1000 genomes]
rs10079517	1.00[EUR][1000 genomes]
rs10491432	1.00[EUR][1000 genomes]
rs10491433	1.00[EUR][1000 genomes]
rs11567717	1.00[EUR][1000 genomes]
rs11567730	1.00[EUR][1000 genomes]
rs11567764	1.00[EUR][1000 genomes]
rs11951270	1.00[EUR][1000 genomes]
rs1374015	1.00[EUR][1000 genomes]
rs1494570	1.00[EUR][1000 genomes]
rs16902367	1.00[EUR][1000 genomes]
rs16902514	1.00[EUR][1000 genomes]
rs16902535	1.00[EUR][1000 genomes]
rs16902557	1.00[EUR][1000 genomes]
rs16902562	1.00[EUR][1000 genomes]
rs16902592	1.00[EUR][1000 genomes]
rs16902593	1.00[EUR][1000 genomes]
rs16902594	1.00[EUR][1000 genomes]
rs16902638	1.00[EUR][1000 genomes]
rs16902639	1.00[EUR][1000 genomes]
rs16902643	1.00[EUR][1000 genomes]
rs16902650	1.00[EUR][1000 genomes]
rs16902651	1.00[EUR][1000 genomes]
rs28756345	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55662701	1.00[EUR][1000 genomes]
rs55696459	1.00[EUR][1000 genomes]
rs56053392	1.00[EUR][1000 genomes]
rs56169453	1.00[EUR][1000 genomes]
rs56276485	1.00[EUR][1000 genomes]
rs56297110	1.00[EUR][1000 genomes]
rs56773364	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57435143	1.00[EUR][1000 genomes]
rs57498894	1.00[EUR][1000 genomes]
rs58541693	1.00[EUR][1000 genomes]
rs58671818	1.00[EUR][1000 genomes]
rs58872016	1.00[EUR][1000 genomes]
rs59555387	1.00[EUR][1000 genomes]
rs59714026	1.00[EUR][1000 genomes]
rs6451222	1.00[EUR][1000 genomes]
rs6861184	1.00[EUR][1000 genomes]
rs6864736	1.00[EUR][1000 genomes]
rs6875303	1.00[EUR][1000 genomes]
rs6881747	1.00[EUR][1000 genomes]
rs6881919	1.00[EUR][1000 genomes]
rs6894309	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73076116	1.00[EUR][1000 genomes]
rs73076118	1.00[EUR][1000 genomes]
rs73080218	1.00[EUR][1000 genomes]
rs73080241	1.00[EUR][1000 genomes]
rs73080293	1.00[EUR][1000 genomes]
rs73082265	1.00[EUR][1000 genomes]
rs73082277	1.00[EUR][1000 genomes]
rs73084351	1.00[EUR][1000 genomes]
rs73084388	1.00[EUR][1000 genomes]
rs73084398	1.00[EUR][1000 genomes]
rs73086208	1.00[EUR][1000 genomes]
rs73086212	1.00[EUR][1000 genomes]
rs73086213	1.00[EUR][1000 genomes]
rs73086237	1.00[EUR][1000 genomes]
rs73086243	1.00[EUR][1000 genomes]
rs73086251	1.00[EUR][1000 genomes]
rs73086261	1.00[EUR][1000 genomes]
rs73086281	1.00[EUR][1000 genomes]
rs73086282	1.00[EUR][1000 genomes]
rs73086302	1.00[EUR][1000 genomes]
rs73088209	1.00[EUR][1000 genomes]
rs73088238	1.00[AMR][1000 genomes]
rs73088244	1.00[EUR][1000 genomes]
rs73090209	1.00[EUR][1000 genomes]
rs73090222	1.00[EUR][1000 genomes]
rs73090239	1.00[EUR][1000 genomes]
rs73090241	1.00[EUR][1000 genomes]
rs73090248	1.00[EUR][1000 genomes]
rs73090257	1.00[EUR][1000 genomes]
rs73090276	1.00[EUR][1000 genomes]
rs73090284	1.00[EUR][1000 genomes]
rs73090289	1.00[EUR][1000 genomes]
rs73090291	1.00[EUR][1000 genomes]
rs73090295	1.00[EUR][1000 genomes]
rs73090298	1.00[EUR][1000 genomes]
rs73092011	1.00[EUR][1000 genomes]
rs73092033	1.00[EUR][1000 genomes]
rs73092034	1.00[EUR][1000 genomes]
rs73092092	1.00[EUR][1000 genomes]
rs73092100	1.00[EUR][1000 genomes]
rs73094009	1.00[EUR][1000 genomes]
rs73094019	1.00[EUR][1000 genomes]
rs73094022	1.00[EUR][1000 genomes]
rs73750806	1.00[EUR][1000 genomes]
rs73750816	1.00[EUR][1000 genomes]
rs73750817	1.00[EUR][1000 genomes]
rs7701519	0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7704710	1.00[EUR][1000 genomes]
rs7708334	0.94[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7710405	1.00[EUR][1000 genomes]
rs7714297	0.92[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7720394	0.94[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7724777	1.00[EUR][1000 genomes]
rs9292610	0.94[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35771000-35781800	Weak transcription	Brain Anterior Caudate	brain
2	chr5:35772200-35777400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr5:35772400-35780600	Weak transcription	HSMM	muscle
4	chr5:35772800-35778000	Weak transcription	Fetal Thymus	thymus
5	chr5:35772800-35778000	Weak transcription	Thymus	Thymus
6	chr5:35774600-35780800	Weak transcription	NHDF-Ad	bronchial
7	chr5:35774600-35781000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:35775000-35779600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:35775400-35777400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr5:35776400-35777600	Enhancers	Hela-S3	cervix
11	chr5:35776800-35777600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr5:35776800-35780400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr5:35777000-35777400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr5:35777000-35777400	Enhancers	NHLF	lung
15	chr5:35777000-35777600	Enhancers	Osteobl	bone
16	chr5:35777000-35778000	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr5:35777000-35778000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr5:35777000-35778000	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr5:35777000-35778200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr5:35777000-35780400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr5:35777000-35780600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr5:35777000-35780800	Weak transcription	HUVEC	blood vessel
23	chr5:35777200-35778000	Enhancers	Primary T cells from cord blood	blood
24	chr5:35777200-35778400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr5:35777200-35780000	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr5:35777200-35780400	Enhancers	Primary T helper cells fromperipheralblood	blood

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