Variant report

Variant	rs73088238
Chromosome Location	chr5:35798023-35798024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35797431..35799270-chr5:35801960..35804171,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10041865	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10077553	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28756345	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56773364	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6876261	1.00[AMR][1000 genomes]
rs6894309	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7701519	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7708334	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7714297	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7720394	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9292610	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35785000-35803200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:35791000-35799600	Weak transcription	Osteobl	bone
3	chr5:35793200-35798600	Enhancers	Fetal Thymus	thymus
4	chr5:35795200-35802600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:35795400-35798200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:35796000-35800000	Weak transcription	HSMMtube	muscle
7	chr5:35797200-35798400	Enhancers	Fetal Muscle Leg	muscle
8	chr5:35797200-35798400	Enhancers	Gastric	stomach
9	chr5:35797400-35798200	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr5:35797400-35798600	Enhancers	Thymus	Thymus
11	chr5:35797400-35798800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr5:35797400-35798800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr5:35797400-35799400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr5:35797400-35799600	Weak transcription	NHDF-Ad	bronchial
15	chr5:35797400-35803200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:35797600-35798200	Enhancers	Dnd41	blood
17	chr5:35797600-35798600	Enhancers	Primary T cells fromperipheralblood	blood
18	chr5:35797600-35799000	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr5:35797600-35802800	Weak transcription	Fetal Brain Male	brain
20	chr5:35797600-35803000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr5:35797600-35803000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr5:35797800-35798200	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr5:35797800-35799200	Weak transcription	Primary T cells from cord blood	blood
24	chr5:35797800-35799200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr5:35797800-35799600	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr5:35797800-35802800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr5:35797800-35804200	Weak transcription	Pancreas	Pancrea
28	chr5:35798000-35798200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr5:35798000-35802200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr5:35798000-35803000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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