The 2.0 version of rSNPBase

Variant report

Variant rs11567717
Chromosome Location chr5:35863428-35863429
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:35857400-35869200 Transcr. at gene 5' and 3' Primary T helper cells PMA-I stimulated --
2 chr5:35857800-35866600 Transcr. at gene 5' and 3' Dnd41 blood
3 chr5:35858200-35864800 Transcr. at gene 5' and 3' Primary T helper 17 cells PMA-I stimulated --
4 chr5:35858800-35864800 Transcr. at gene 5' and 3' Primary T helper memory cells from peripheral blood 2 blood
5 chr5:35858800-35865000 Transcr. at gene 5' and 3' Primary T cells effector/memory enriched fromperipheralblood blood
6 chr5:35858800-35865400 Transcr. at gene 5' and 3' Primary T helper memory cells from peripheral blood 1 blood
7 chr5:35858800-35866600 Transcr. at gene 5' and 3' Primary T cells fromperipheralblood blood
8 chr5:35859000-35864800 Transcr. at gene 5' and 3' Primary T cells from cord blood blood
9 chr5:35859000-35864800 Transcr. at gene 5' and 3' Primary T helper naive cells from peripheral blood blood
10 chr5:35859000-35865000 Transcr. at gene 5' and 3' Primary T helper cells fromperipheralblood blood
11 chr5:35860000-35869000 Weak transcription HMEC breast
12 chr5:35860000-35876600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr5:35860400-35872800 Weak transcription Spleen Spleen
14 chr5:35860400-35883800 Weak transcription Small Intestine intestine
15 chr5:35860600-35864800 Transcr. at gene 5' and 3' Primary T killer naive cells fromperipheralblood blood
16 chr5:35860800-35863800 Weak transcription Primary B cells from cord blood blood
17 chr5:35860800-35864800 Transcr. at gene 5' and 3' Primary T killer memory cells from peripheral blood blood
18 chr5:35860800-35865000 Transcr. at gene 5' and 3' Primary T helper naive cells fromperipheralblood blood
19 chr5:35861000-35863800 Transcr. at gene 5' and 3' Thymus Thymus
20 chr5:35861200-35870400 Weak transcription Rectal Mucosa Donor 29 rectum
21 chr5:35862000-35864200 Strong transcription NHLF lung
22 chr5:35862400-35863800 Enhancers GM12878-XiMat blood
23 chr5:35862400-35864400 Weak transcription Muscle Satellite Cultured Cells --
24 chr5:35862400-35865200 Weak transcription NH-A brain
25 chr5:35862400-35870400 Weak transcription Duodenum Mucosa Duodenum
26 chr5:35862600-35863800 Strong transcription HSMM muscle
27 chr5:35862600-35864600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr5:35862600-35868200 Strong transcription Fetal Thymus thymus
29 chr5:35862600-35868600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
30 chr5:35862600-35876200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
31 chr5:35862800-35863600 Weak transcription Osteobl bone
32 chr5:35863200-35863800 Enhancers Primary hematopoietic stem cells short term culture blood
33 chr5:35863200-35864800 Transcr. at gene 5' and 3' Primary T regulatory cells fromperipheralblood blood
34 chr5:35863400-35863600 Enhancers H9 Cell Line embryonic stem cell
35 chr5:35863400-35863600 Transcr. at gene 5' and 3' Primary mononuclear cells fromperipheralblood Blood
36 chr5:35863400-35863600 Flanking Active TSS Lung lung
37 chr5:35863400-35863600 ZNF genes & repeats NHEK skin
38 chr5:35863400-35863800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
39 chr5:35863400-35863800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
40 chr5:35863400-35863800 Strong transcription NHDF-Ad bronchial
41 chr5:35863400-35864000 Transcr. at gene 5' and 3' Primary Natural Killer cells fromperipheralblood blood

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Last update: Aug 31, 2015