Variant report

Variant	rs11958548
Chromosome Location	chr5:35768553-35768554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10058723	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10079269	1.00[ASN][1000 genomes]
rs10079517	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs11567693	1.00[CHB][hapmap]
rs11567757	1.00[CHB][hapmap]
rs11951270	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11953960	1.00[CHB][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11954459	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11954524	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2277042	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2277044	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs35908401	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4346794	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4361544	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4361545	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4634378	0.85[ASN][1000 genomes]
rs56016314	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56053392	0.90[ASN][1000 genomes]
rs56169453	1.00[ASN][1000 genomes]
rs56276485	1.00[ASN][1000 genomes]
rs56349002	0.85[ASN][1000 genomes]
rs57116204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs57681685	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58390944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58522285	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58846527	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59217391	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs60501022	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61180877	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61373681	0.89[ASN][1000 genomes]
rs6451224	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6860528	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6861184	0.89[ASN][1000 genomes]
rs6862072	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6875303	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs6881747	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs73086237	0.95[ASN][1000 genomes]
rs73086251	1.00[ASN][1000 genomes]
rs73086255	1.00[ASN][1000 genomes]
rs73086261	1.00[ASN][1000 genomes]
rs73086281	1.00[ASN][1000 genomes]
rs73747933	1.00[ASN][1000 genomes]
rs73747964	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73747965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73747966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73747969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73747970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73747971	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73747973	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73747974	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73747976	1.00[AMR][1000 genomes]
rs73747977	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73747978	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73747980	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs73747983	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7700501	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7700688	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7730148	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9292611	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35766000-35770000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:35766400-35770600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr5:35766600-35770600	Weak transcription	Osteobl	bone
4	chr5:35767000-35770600	Weak transcription	Hela-S3	cervix
5	chr5:35768200-35770000	Enhancers	Brain Germinal Matrix	brain

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