Variant report

Variant	rs9292611
Chromosome Location	chr5:35792122-35792123
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10058723	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10079269	0.85[ASN][1000 genomes]
rs10079517	1.00[ASN][1000 genomes]
rs11951270	1.00[JPT][hapmap]
rs11953960	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11954459	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11954524	1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11958548	1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2277042	1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2277044	1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs35908401	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4346794	1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4361544	0.93[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4361545	0.93[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4634378	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56016314	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56169453	0.85[ASN][1000 genomes]
rs56276485	0.85[ASN][1000 genomes]
rs56349002	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57116204	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs57681685	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs58390944	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs58522285	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs58846527	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59217391	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60501022	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs61180877	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs61373681	0.95[ASN][1000 genomes]
rs6451224	1.00[JPT][hapmap]
rs6860528	1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6861184	0.95[ASN][1000 genomes]
rs6862072	1.00[JPT][hapmap]
rs6875303	1.00[ASN][1000 genomes]
rs6881747	1.00[JPT][hapmap]
rs73086251	0.85[ASN][1000 genomes]
rs73086255	0.85[ASN][1000 genomes]
rs73086261	0.85[ASN][1000 genomes]
rs73086281	0.85[ASN][1000 genomes]
rs73747933	0.85[ASN][1000 genomes]
rs73747964	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73747965	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73747966	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73747969	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73747970	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73747971	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73747973	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73747974	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73747976	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73747977	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73747978	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73747980	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747983	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7700501	1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7700688	1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7730148	1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35785000-35803200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:35787000-35792200	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr5:35787400-35793200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr5:35788400-35796800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr5:35788800-35796800	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr5:35789400-35793400	Weak transcription	Thymus	Thymus
7	chr5:35789400-35793600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr5:35789400-35794000	Weak transcription	Dnd41	blood
9	chr5:35789800-35793200	Weak transcription	Fetal Thymus	thymus
10	chr5:35790800-35792800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr5:35790800-35796800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr5:35791000-35799600	Weak transcription	Osteobl	bone
13	chr5:35791200-35792800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr5:35791200-35794600	Weak transcription	HSMM	muscle
15	chr5:35791200-35797000	Weak transcription	NHDF-Ad	bronchial
16	chr5:35791400-35792800	Weak transcription	Primary T cells from cord blood	blood
17	chr5:35791400-35793000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr5:35791400-35793000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr5:35791600-35792800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr5:35791800-35792200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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