Variant report

Variant	rs6880287
Chromosome Location	chr5:35820789-35820790
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35814232..35817438-chr5:35818379..35821437,3	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10064778	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10065462	1.00[ASN][1000 genomes]
rs10078972	1.00[ASN][1000 genomes]
rs11567693	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11567757	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11739191	1.00[ASN][1000 genomes]
rs369792	1.00[EUR][1000 genomes]
rs6451224	1.00[ASN][1000 genomes]
rs6860903	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6862072	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6873241	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6889625	1.00[ASN][1000 genomes]
rs6890572	1.00[ASN][1000 genomes]
rs7703463	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35808800-35822400	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr5:35816000-35829200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr5:35817800-35821800	Enhancers	Primary T cells from cord blood	blood
4	chr5:35817800-35822000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr5:35817800-35822000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr5:35817800-35822200	Weak transcription	Dnd41	blood
7	chr5:35817800-35822600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr5:35818600-35821600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
9	chr5:35819000-35830200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr5:35819400-35821400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr5:35819600-35835600	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr5:35819800-35821600	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr5:35819800-35822400	Enhancers	Thymus	Thymus
14	chr5:35819800-35823000	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr5:35820000-35827800	Enhancers	Primary T cells fromperipheralblood	blood
16	chr5:35820000-35827800	Enhancers	Fetal Thymus	thymus
17	chr5:35820200-35821400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
18	chr5:35820400-35824200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr5:35820600-35821000	Enhancers	Spleen	Spleen
20	chr5:35820600-35821200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
21	chr5:35820600-35821400	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr5:35820600-35821800	Enhancers	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links