Variant report

Variant	rs766065
Chromosome Location	chr5:36073801-36073802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:143)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:143 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr5:36073760-36073910	AG10803	skin:	n/a	n/a
2	CTCF	chr5:36073800-36073950	HepG2	liver:	n/a	n/a
3	CTCF	chr5:36073740-36073890	AG09319	gingival:	n/a	n/a
4	CTCF	chr5:36073756-36073978	K562	blood:	n/a	n/a
5	RAD21	chr5:36073743-36073930	K562	blood:	n/a	n/a
6	CTCF	chr5:36073786-36073986	IMR90	lung:	n/a	n/a
7	CTCF	chr5:36073771-36073935	GM13977	blood:	n/a	n/a
8	CTCF	chr5:36073760-36073910	HVMF	connective:	n/a	n/a
9	CTCF	chr5:36073720-36073870	HEEpiC	esophagus:	n/a	n/a
10	CTCF	chr5:36073780-36073930	GM12867	blood:	n/a	n/a
11	ATF2	chr5:36073682-36074098	H1-hESC	embryonic stem cell:	n/a	n/a
12	RAD21	chr5:36073627-36074092	H1-hESC	embryonic stem cell:	n/a	n/a
13	CTCF	chr5:36073757-36073958	MCF-7	breast:	n/a	n/a
14	CTCF	chr5:36073762-36073968	A549	lung:	n/a	n/a
15	CTCF	chr5:36073800-36073950	HPF	lung:	n/a	n/a
16	CTCF	chr5:36073762-36073950	Fibrobl	skin:	n/a	n/a
17	RAD21	chr5:36073689-36074013	ECC-1	luminal epithelium:	n/a	n/a
18	RAD21	chr5:36073692-36074098	H1-hESC	embryonic stem cell:	n/a	n/a
19	CTCF	chr5:36073740-36073890	NHDF-neo	bronchial:	n/a	n/a
20	CTCF	chr5:36073760-36073910	GM12867	blood:	n/a	n/a
21	CTCF	chr5:36073780-36073930	GM12873	blood:	n/a	n/a
22	CTCF	chr5:36073736-36074006	MCF-7	breast:	n/a	n/a
23	CTCF	chr5:36073714-36073988	HepG2	liver:	n/a	n/a
24	CTCF	chr5:36073760-36073910	GM12801	blood:	n/a	n/a
25	CTCF	chr5:36073764-36073956	GM19239	blood:	n/a	n/a
26	CTCF	chr5:36073800-36073950	MCF-7	breast:	n/a	n/a
27	CTCF	chr5:36073760-36073910	HCT-116	colon:	n/a	n/a
28	CTCF	chr5:36073800-36073950	HPAF	blood vessel:	n/a	n/a
29	CTCF	chr5:36073760-36073910	AG09319	gingival:	n/a	n/a
30	CTCF	chr5:36073800-36073942	MCF-7	breast:	n/a	n/a
31	CEBPB	chr5:36073745-36073987	HepG2	liver:	n/a	n/a
32	CTCF	chr5:36073765-36073946	LNCaP	prostate:	n/a	n/a
33	CTCF	chr5:36073800-36073950	HRE	kidney:	n/a	n/a
34	CTCF	chr5:36073700-36073850	A549	lung:	n/a	n/a
35	CTCF	chr5:36073686-36074011	K562	blood:	n/a	n/a
36	CTCF	chr5:36073780-36073930	Hela-S3	cervix:	n/a	n/a
37	CTCF	chr5:36073800-36073950	NHDF-neo	bronchial:	n/a	n/a
38	CTCF	chr5:36073707-36074037	K562	blood:	n/a	n/a
39	CTCF	chr5:36073780-36073930	NHEK	skin:	n/a	n/a
40	CTCF	chr5:36073760-36073910	AoAF	blood vessel:	n/a	n/a
41	CTCF	chr5:36073691-36074046	GM12878	blood:	n/a	n/a
42	RAD21	chr5:36073603-36074086	HCT-116	colon:	n/a	n/a
43	CTCF	chr5:36073780-36073930	GM12868	blood:	n/a	n/a
44	CTCF	chr5:36073778-36073961	NHEK	skin:	n/a	n/a
45	RUNX3	chr5:36073619-36074027	GM12878	blood:	n/a	n/a
46	RAD21	chr5:36073747-36073943	SK-N-SH_RA	brain:	n/a	n/a
47	CEBPB	chr5:36073749-36073950	Hela-S3	cervix:	n/a	n/a
48	CTCF	chr5:36073602-36074088	MCF-7	breast:	n/a	n/a
49	CTCF	chr5:36073744-36073981	SK-N-SH_RA	brain:	n/a	n/a
50	CTCF	chr5:36073760-36073910	HAc	cerebellar:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35963146..35963981-chr5:36073419..36074223,2	MCF-7	breast:
2	chr5:36073255..36075394-chr5:36079180..36080886,2	K562	blood:

No data

Variant related genes	Relation type
UGT3A2	TF binding region
ENSG00000251591	TF binding region

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10452459	1.00[EUR][1000 genomes]
rs10512641	1.00[EUR][1000 genomes]
rs11949914	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11952545	1.00[EUR][1000 genomes]
rs11953540	1.00[EUR][1000 genomes]
rs11959495	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11960054	1.00[EUR][1000 genomes]
rs12109571	1.00[EUR][1000 genomes]
rs1500223	1.00[EUR][1000 genomes]
rs1500225	1.00[EUR][1000 genomes]
rs16902710	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16902726	1.00[EUR][1000 genomes]
rs16902747	1.00[EUR][1000 genomes]
rs16902765	1.00[EUR][1000 genomes]
rs16902789	1.00[EUR][1000 genomes]
rs16902814	1.00[EUR][1000 genomes]
rs16902829	1.00[EUR][1000 genomes]
rs16902858	1.00[EUR][1000 genomes]
rs16902910	1.00[EUR][1000 genomes]
rs1874182	1.00[EUR][1000 genomes]
rs1965840	1.00[EUR][1000 genomes]
rs2172777	1.00[EUR][1000 genomes]
rs2362981	1.00[EUR][1000 genomes]
rs3853244	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3853245	1.00[EUR][1000 genomes]
rs3895887	1.00[EUR][1000 genomes]
rs4022390	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56815690	1.00[EUR][1000 genomes]
rs57472443	1.00[EUR][1000 genomes]
rs58131800	1.00[EUR][1000 genomes]
rs59754678	1.00[EUR][1000 genomes]
rs60083069	1.00[EUR][1000 genomes]
rs61209349	1.00[EUR][1000 genomes]
rs61656343	1.00[EUR][1000 genomes]
rs6451255	1.00[EUR][1000 genomes]
rs6451267	1.00[EUR][1000 genomes]
rs6860896	1.00[EUR][1000 genomes]
rs6866069	1.00[EUR][1000 genomes]
rs6867280	1.00[EUR][1000 genomes]
rs6869324	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6872883	1.00[EUR][1000 genomes]
rs6873241	1.00[EUR][1000 genomes]
rs6874771	1.00[EUR][1000 genomes]
rs6875875	1.00[EUR][1000 genomes]
rs6878587	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6881555	1.00[EUR][1000 genomes]
rs6886540	1.00[EUR][1000 genomes]
rs6887103	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6894587	1.00[EUR][1000 genomes]
rs6896114	1.00[EUR][1000 genomes]
rs6896401	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6896576	1.00[EUR][1000 genomes]
rs6897845	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6898451	1.00[EUR][1000 genomes]
rs73081933	1.00[EUR][1000 genomes]
rs73081942	1.00[EUR][1000 genomes]
rs73081945	1.00[EUR][1000 genomes]
rs73748793	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751620	1.00[EUR][1000 genomes]
rs73751622	1.00[EUR][1000 genomes]
rs766064	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7702340	1.00[EUR][1000 genomes]
rs7703463	1.00[EUR][1000 genomes]
rs7705125	1.00[EUR][1000 genomes]
rs7709624	1.00[EUR][1000 genomes]
rs7710047	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7718407	1.00[EUR][1000 genomes]
rs7719226	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7723314	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7725596	1.00[EUR][1000 genomes]
rs7730301	1.00[EUR][1000 genomes]
rs7730829	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7733484	1.00[EUR][1000 genomes]
rs921022	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36067200-36090000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:36067800-36078600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:36072200-36074000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr5:36073000-36079400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:36073400-36074400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr5:36073400-36074400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr5:36073400-36074400	Enhancers	Dnd41	blood
8	chr5:36073600-36074200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr5:36073600-36074200	Enhancers	Thymus	Thymus
10	chr5:36073600-36074400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr5:36073600-36074400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr5:36073800-36074000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:36073800-36074000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr5:36073800-36074200	Enhancers	Fetal Thymus	thymus

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