Variant report

Variant	rs766064
Chromosome Location	chr5:36073717-36073718
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:34)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:34 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr5:36073682-36074098	H1-hESC	embryonic stem cell:	n/a	n/a
2	RAD21	chr5:36073627-36074092	H1-hESC	embryonic stem cell:	n/a	n/a
3	RAD21	chr5:36073689-36074013	ECC-1	luminal epithelium:	n/a	n/a
4	RAD21	chr5:36073692-36074098	H1-hESC	embryonic stem cell:	n/a	n/a
5	CTCF	chr5:36073714-36073988	HepG2	liver:	n/a	n/a
6	CTCF	chr5:36073700-36073850	A549	lung:	n/a	n/a
7	CTCF	chr5:36073686-36074011	K562	blood:	n/a	n/a
8	CTCF	chr5:36073707-36074037	K562	blood:	n/a	n/a
9	CTCF	chr5:36073691-36074046	GM12878	blood:	n/a	n/a
10	RAD21	chr5:36073603-36074086	HCT-116	colon:	n/a	n/a
11	RUNX3	chr5:36073619-36074027	GM12878	blood:	n/a	n/a
12	CTCF	chr5:36073602-36074088	MCF-7	breast:	n/a	n/a
13	RAD21	chr5:36073713-36074041	HepG2	liver:	n/a	n/a
14	TCF12	chr5:36073699-36073991	H1-hESC	embryonic stem cell:	n/a	n/a
15	CTCF	chr5:36073702-36074036	K562	blood:	n/a	n/a
16	ZNF143	chr5:36073688-36074053	H1-hESC	embryonic stem cell:	n/a	n/a
17	CTCF	chr5:36073685-36074086	K562	blood:	n/a	n/a
18	CTCF	chr5:36073646-36074146	HCT-116	colon:	n/a	n/a
19	RAD21	chr5:36073628-36074130	ECC-1	luminal epithelium:	n/a	n/a
20	RAD21	chr5:36073664-36074084	SK-N-SH_RA	brain:	n/a	n/a
21	CTCF	chr5:36073600-36073750	GM12869	blood:	n/a	n/a
22	CEBPB	chr5:36073684-36074094	MCF-7	breast:	n/a	n/a
23	CTCF	chr5:36073690-36074048	H1-hESC	embryonic stem cell:	n/a	n/a
24	STAT3	chr5:36073693-36073971	MCF10A-Er-Src	breast:	n/a	n/a
25	JUND	chr5:36073695-36074039	H1-hESC	embryonic stem cell:	n/a	n/a
26	RAD21	chr5:36073673-36074274	SK-N-SH	brain:	n/a	n/a
27	GTF2F1	chr5:36073716-36073915	H1-hESC	embryonic stem cell:	n/a	n/a
28	RAD21	chr5:36073631-36074193	HCT-116	colon:	n/a	n/a
29	RAD21	chr5:36073689-36074055	Hela-S3	cervix:	n/a	n/a
30	RAD21	chr5:36073703-36074139	MCF-7	breast:	n/a	n/a
31	RAD21	chr5:36073699-36074031	GM12878	blood:	n/a	n/a
32	RAD21	chr5:36073677-36073956	HepG2	liver:	n/a	n/a
33	CTCF	chr5:36073596-36074108	MCF-7	breast:	n/a	n/a
34	RAD21	chr5:36073666-36074090	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35963146..35963981-chr5:36073419..36074223,2	MCF-7	breast:
2	chr5:36073255..36075394-chr5:36079180..36080886,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000251591	TF binding region
UGT3A2	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1113073	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12513526	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12522542	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12654974	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12655763	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12658867	0.96[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13156321	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13163292	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13177876	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13181789	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1393158	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs144694	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs145190	0.80[EUR][1000 genomes]
rs1501817	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs155550	0.80[EUR][1000 genomes]
rs155551	0.80[EUR][1000 genomes]
rs17342682	0.96[CEU][hapmap];0.87[CHD][hapmap];0.92[GIH][hapmap];0.84[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs17343598	0.96[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1827369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1827371	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs198353	0.81[EUR][1000 genomes]
rs2012367	1.00[CEU][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs267758	0.85[CEU][hapmap];0.81[GIH][hapmap]
rs267766	0.96[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs267787	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs267792	0.81[EUR][1000 genomes]
rs34165875	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34783816	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35746165	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36064347	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3898058	0.93[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs3913488	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4021314	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs40499	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4415106	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4869468	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4869614	0.96[CEU][hapmap]
rs766065	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7705825	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7705975	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7706216	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7710047	1.00[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36067200-36090000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:36067800-36078600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:36072000-36073800	Weak transcription	Fetal Thymus	thymus
4	chr5:36072200-36074000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr5:36073000-36079400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:36073400-36074400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr5:36073400-36074400	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr5:36073400-36074400	Enhancers	Dnd41	blood
9	chr5:36073600-36073800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr5:36073600-36074200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr5:36073600-36074200	Enhancers	Thymus	Thymus
12	chr5:36073600-36074400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr5:36073600-36074400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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