Variant report

Variant	rs1827371
Chromosome Location	chr5:36071359-36071360
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UGT3A2-1	chr5:36071184-36071460	NONHSAT101020

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1113073	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12513526	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12522542	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12654974	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12655763	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12658867	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13156321	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13163292	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13177876	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13181789	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1393158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs144694	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs145190	0.80[EUR][1000 genomes]
rs1501817	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs155550	0.80[EUR][1000 genomes]
rs155551	0.80[EUR][1000 genomes]
rs17342682	0.96[CEU][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17343598	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs173611	0.80[EUR][1000 genomes]
rs1827369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs198353	0.81[EUR][1000 genomes]
rs2012367	1.00[CEU][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs267758	0.85[CEU][hapmap]
rs267766	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs267787	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs267792	0.82[EUR][1000 genomes]
rs34165875	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34783816	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35746165	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36064347	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3843907	1.00[YRI][hapmap]
rs3898058	0.93[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs3913488	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4021314	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs40499	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4415106	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4869468	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4869614	0.96[CEU][hapmap]
rs766064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7705825	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7705975	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7706216	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36067200-36071800	Weak transcription	Spleen	Spleen
2	chr5:36067200-36090000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:36067800-36078600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr5:36068000-36073400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr5:36070600-36072000	Enhancers	Pancreas	Pancrea
6	chr5:36070800-36071400	Enhancers	Fetal Thymus	thymus
7	chr5:36071000-36071400	Active TSS	Duodenum Mucosa	Duodenum
8	chr5:36071000-36071400	Enhancers	Ovary	ovary
9	chr5:36071000-36071600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:36071000-36071600	Active TSS	NHLF	lung
11	chr5:36071000-36071800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:36071000-36071800	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr5:36071000-36071800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr5:36071000-36071800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:36071000-36072000	Flanking Active TSS	Dnd41	blood
16	chr5:36071200-36071400	Active TSS	Primary monocytes fromperipheralblood	blood
17	chr5:36071200-36071400	Active TSS	Primary T cells from cord blood	blood
18	chr5:36071200-36071400	Active TSS	Rectal Mucosa Donor 31	rectum
19	chr5:36071200-36071400	Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr5:36071200-36071600	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr5:36071200-36071600	Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr5:36071200-36071600	Active TSS	Primary T cells fromperipheralblood	blood
23	chr5:36071200-36071600	Active TSS	Primary T helper cells fromperipheralblood	blood
24	chr5:36071200-36071600	Active TSS	Primary T killer memory cells from peripheral blood	blood
25	chr5:36071200-36071600	Active TSS	Liver	Liver
26	chr5:36071200-36071600	Active TSS	Thymus	Thymus
27	chr5:36071200-36071600	Bivalent/Poised TSS	A549	lung
28	chr5:36071200-36071600	Bivalent/Poised TSS	HSMM	muscle
29	chr5:36071200-36071600	Bivalent/Poised TSS	HUVEC	blood vessel
30	chr5:36071200-36071600	Active TSS	Monocytes-CD14+_RO01746	blood
31	chr5:36071200-36071800	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr5:36071200-36071800	Flanking Active TSS	Primary B cells from peripheral blood	blood
33	chr5:36071200-36071800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
34	chr5:36071200-36071800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
35	chr5:36071200-36071800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
36	chr5:36071200-36071800	Active TSS	Adipose Nuclei	Adipose
37	chr5:36071200-36071800	Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr5:36071200-36071800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
39	chr5:36071200-36071800	Active TSS	Rectal Mucosa Donor 29	rectum
40	chr5:36071200-36071800	Active TSS	Rectal Smooth Muscle	rectum
41	chr5:36071200-36071800	Flanking Active TSS	GM12878-XiMat	blood
42	chr5:36071200-36071800	Bivalent/Poised TSS	Hela-S3	cervix
43	chr5:36071200-36071800	Active TSS	HMEC	breast
44	chr5:36071200-36071800	Active TSS	NHDF-Ad	bronchial
45	chr5:36071200-36071800	Bivalent/Poised TSS	Osteobl	bone

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