Variant report

Variant	rs40499
Chromosome Location	chr5:36093932-36093933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1113073	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12513526	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12522542	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12654974	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12655763	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12658867	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13156321	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13163292	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13177876	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13181789	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1393158	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs145190	0.80[EUR][1000 genomes]
rs1501817	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17342682	0.80[EUR][1000 genomes]
rs17343598	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1827369	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1827371	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2012367	0.81[EUR][1000 genomes]
rs2455316	0.83[EUR][1000 genomes]
rs267754	0.81[EUR][1000 genomes]
rs267758	0.81[EUR][1000 genomes]
rs267766	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs33615	0.83[EUR][1000 genomes]
rs34165875	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34783816	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35746165	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36064347	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3898058	0.98[ASN][1000 genomes]
rs3913488	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4021314	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4415106	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869468	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs766064	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7705825	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7705975	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7706216	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36090600-36099600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr5:36090800-36107000	Weak transcription	HSMMtube	muscle
3	chr5:36092200-36106000	Weak transcription	Primary B cells from cord blood	blood
4	chr5:36092800-36116200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:36093600-36104000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr5:36093600-36107600	Weak transcription	Psoas Muscle	Psoas

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