Variant report

Variant	rs267754
Chromosome Location	chr5:36134243-36134244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:36125724..36129608-chr5:36132494..36136424,4	MCF-7	breast:
2	chr5:36131468..36135181-chr5:36149852..36152812,3	K562	blood:
3	chr5:36133329..36138485-chr5:36146484..36151861,7	K562	blood:

Variant related genes	Relation type
ENSG00000164187	Chromatin interaction
ENSG00000145604	Chromatin interaction
ENSG00000207756	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12655763	0.80[EUR][1000 genomes]
rs13156321	0.82[EUR][1000 genomes]
rs13177876	0.81[EUR][1000 genomes]
rs144694	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs145190	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs155550	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs155551	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs173611	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs198353	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2455316	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs267758	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs267764	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs267787	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs267792	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs33615	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3913488	0.80[EUR][1000 genomes]
rs40499	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases
3	nsv4795	chr5:36106115-36150407	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36100200-36139400	Weak transcription	Gastric	stomach
2	chr5:36101200-36150800	Weak transcription	Colonic Mucosa	Colon
3	chr5:36102600-36141400	Weak transcription	Hela-S3	cervix
4	chr5:36103600-36147200	Weak transcription	HUVEC	blood vessel
5	chr5:36104800-36139400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:36105600-36142400	Weak transcription	NH-A	brain
7	chr5:36106200-36139800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr5:36108200-36139000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:36108200-36139200	Weak transcription	Esophagus	oesophagus
10	chr5:36108200-36139400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr5:36108200-36139400	Weak transcription	Aorta	Aorta
12	chr5:36108400-36139800	Weak transcription	Brain Substantia Nigra	brain
13	chr5:36108400-36150600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr5:36108600-36139800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:36108600-36142800	Weak transcription	Fetal Kidney	kidney
16	chr5:36108800-36134400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr5:36109400-36140000	Weak transcription	NHLF	lung
18	chr5:36110800-36134800	Weak transcription	Brain Hippocampus Middle	brain
19	chr5:36116400-36134800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr5:36117400-36135800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr5:36117400-36140000	Weak transcription	Small Intestine	intestine
22	chr5:36117400-36150200	Weak transcription	Colon Smooth Muscle	Colon
23	chr5:36117800-36134600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr5:36118200-36139800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr5:36118400-36134400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr5:36118600-36139200	Weak transcription	Left Ventricle	heart
27	chr5:36122400-36147800	Weak transcription	NHDF-Ad	bronchial
28	chr5:36122800-36134600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr5:36122800-36140000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr5:36122800-36140000	Weak transcription	Osteobl	bone
31	chr5:36122800-36140200	Weak transcription	Placenta	Placenta
32	chr5:36123600-36134400	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr5:36123800-36134400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr5:36124400-36134600	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr5:36126800-36150400	Weak transcription	Fetal Heart	heart
36	chr5:36127600-36136000	Weak transcription	HSMMtube	muscle
37	chr5:36127800-36139000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr5:36128000-36139200	Weak transcription	Spleen	Spleen
39	chr5:36128000-36140000	Weak transcription	HSMM	muscle
40	chr5:36128200-36134400	Weak transcription	Fetal Thymus	thymus
41	chr5:36128200-36139000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr5:36128200-36150800	Weak transcription	Psoas Muscle	Psoas
43	chr5:36128800-36134600	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr5:36128800-36139000	Weak transcription	Thymus	Thymus
45	chr5:36128800-36139200	Weak transcription	Lung	lung
46	chr5:36128800-36139200	Weak transcription	Ovary	ovary
47	chr5:36128800-36139600	Weak transcription	Rectal Smooth Muscle	rectum
48	chr5:36128800-36139800	Weak transcription	Pancreas	Pancrea
49	chr5:36129000-36139000	Weak transcription	Fetal Stomach	stomach
50	chr5:36129200-36134600	Weak transcription	Brain Angular Gyrus	brain

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